WormBase: a multi-species resource for nematode biology and genomics. - Todd W. Harris; Nansheng Chen; Fiona Cunningham; Marcela K. Tello-Ruiz; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Keith Bradnam; Juancarlos Chan; Chao-Kung Chen; Wen J. Chen; et al. (Nucleic Acids Res., 2004)

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. - Nansheng Chen; Todd W. Harris; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Keith Bradnam; Payan Canaran; Juancarlos Chan; Chao-Kung Chen; Wen J. Chen; Fiona Cunningham; et al. (Nucleic Acids Res., 2005)

The eFIP system for text mining of protein interaction networks of phosphorylated proteins. - Catalina O. Tudor; Cecilia N. Arighi; Qinghua Wang 003; Cathy H. Wu; K. Vijay-Shanker (Database J. Biol. Databases Curation, 2012)

Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees. - Qinghua Wang 003; Cecilia N. Arighi; Benjamin L. King; Shawn W. Polson; James Vincent; Chuming Chen; Hongzhan Huang; Brewster F. Kingham; Shallee T. Page; Marc Farnum Rendino; William Kelley Thomas; Daniel W. Udwary; et al. (Database J. Biol. Databases Curation, 2012)

Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach. - Manabu Torii; Cecilia N. Arighi; Qinghua Wang 003; Cathy H. Wu; K. Vijay-Shanker (BCB, 2013)

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress. - Qinghua Wang 003; Keerthi Venkataramanan; Hongzhan Huang; Eleftherios T. Papoutsakis; Cathy H. Wu (BMC Syst. Biol., 2013)

DDI2PPI: an integrated web server for protein-protein interaction and residue contact matrix predictions. - Tianchuan Du; Alvaro J. González; Qinghua Wang 003; Hongzhan Huang; Li Liao; Cathy H. Wu (BCB, 2014)

RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information. - Manabu Torii; Cecilia N. Arighi; Gang Li 021; Qinghua Wang 003; Cathy H. Wu; K. Vijay-Shanker (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

Overview of the interactive task in BioCreative V. - Qinghua Wang 003; Shabbir Syed-Abdul; Lara Almeida; Sophia Ananiadou; Yalbi I. Balderas-Martínez; Riza Batista-Navarro; David Campos 001; Lucy Chilton; Hui-Jou Chou; Gabriela Contreras; Laurel Cooper; Hong-Jie Dai; et al. (Database J. Biol. Databases Curation, 2016)

Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. - Darren A. Natale; Cecilia N. Arighi; Judith A. Blake; Jonathan P. Bona; Chuming Chen; Sheng-Chih Chen; Karen R. Christie; Julie Cowart; Peter D'Eustachio; Alexander D. Diehl; Harold J. Drabkin; William D. Duncan; et al. (Nucleic Acids Res., 2017)

iPTMnet: an integrated resource for protein post-translational modification network discovery. - Hongzhan Huang; Cecilia N. Arighi; Karen E. Ross; Jia Ren; Gang Li 021; Sheng-Chih Chen; Qinghua Wang 003; Julie Cowart; K. Vijay-Shanker; Cathy H. Wu (Nucleic Acids Res., 2018)

WormBase 2017: molting into a new stage. - Raymond Y. N. Lee; Kevin L. Howe; Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Hans-Michael Müller; et al. (Nucleic Acids Res., 2018)

PIRSitePredict for protein functional site prediction using position-specific rules. - Chuming Chen; Qinghua Wang 003; Hongzhan Huang; Cholanayakanahalli R. Vinayaka; John S. Garavelli; Cecilia N. Arighi; Darren A. Natale; Cathy H. Wu (Database J. Biol. Databases Curation, 2019)

WormBase: a modern Model Organism Information Resource. - Todd W. Harris; Valerio Arnaboldi; Scott Cain; Juancarlos Chan; Wen J. Chen; Jae-Hyoung Cho; Paul Davis 001; Sibyl Gao; Christian A. Grove; Ranjana Kishore; Raymond Y. N. Lee; Hans-Michael Müller; et al. (Nucleic Acids Res., 2020)

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. - Alistair MacDougall; Vladimir Volynkin; Rabie Saidi; Diego Poggioli; Hermann Zellner; Emma Hatton-Ellis; Vishal Joshi; Claire O'Donovan; Sandra E. Orchard; Andrea H. Auchincloss; Delphine Baratin; Jerven T. Bolleman; et al. (Bioinform., 2021)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)