Operon prediction based on SVM. - Guoqing Zhang 006; Zhi-Wei Cao; Qingming Luo; Yu-Dong Cai 001; Yixue Li (Comput. Biol. Chem., 2006)

Knowledge guided analysis of microarray data. - Zhuo Fang; Jiong Yang; Yixue Li; Qingming Luo; Lei Liu (J. Biomed. Informatics, 2006)

KDE Bioscience: Platform for bioinformatics analysis workflows. - Qiang Lu; Pei Hao; Vasa Curcin; Wei-Zhong He; Yuan-Yuan Li; Qingming Luo; Yike Guo; Yi-Xue Li (J. Biomed. Informatics, 2006)

GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations. - Qingwei Xu; Yixiang Shi; Qiang Lu; Guoqing Zhang 006; Qingming Luo; Yixue Li (BMC Bioinform., 2008)

Effective method for automatic contour extraction in computerized tomography reconstruction. - Zheng Fang; Qingming Luo; Qian Liu 003; Kun Bi; Xiaomin Sun (J. Electronic Imaging, 2008)

Database for Development of the Cultured Neuronal Network. - Xiangning Li; Jiangbo Pu; Geng Zhu; Wenjuan Chen; Wei Zhou; Qingming Luo (BMEI, 2009)

Homeostatically regulated synchronized oscillations induced by short-term tetrodotoxin treatment in cultured neuronal network. - Wei Zhou; Xiangning Li; Man Liu; Yuan Zhao; Geng Zhu; Qingming Luo (Biosyst., 2009)

China Physiome Project: A Comprehensive Framework for Anatomical and Physiological Databases From the China Digital Human and the Visible Rat. - Dao Han; Qian Liu 003; Qingming Luo (Proc. IEEE, 2009)

Simultaneous monitoring of intracellular pH changes and hemodynamic response during cortical spreading depression by fluorescence-corrected multimodal optical imaging. - Xiaoli Sun; Yaru Wang; Shangbin Chen; Weihua Luo; Pengcheng Li 003; Qingming Luo (NeuroImage, 2011)

Molecular imaging of small animals with fluorescent proteins: From projection to multimodality. - Xiaoquan Yang; Hui Gong; Jianwei Fu; Guotao Quan; Chuan Huang; Qingming Luo (Comput. Medical Imaging Graph., 2012)

Altered resting-state functional connectivity after cortical spreading depression in mice. - Bing Li; Fangyuan Zhou; Qingming Luo; Pengcheng Li 003 (NeuroImage, 2012)

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution. - Hui Gong; Shaoqun Zeng; Cheng Yan; Xiaohua Lv; Zhongqin Yang; Tonghui Xu; Zhao Feng; Wenxiang Ding; Xiaoli Qi; Anan Li; Jingpeng Wu; Qingming Luo (NeuroImage, 2013)

Simultaneous detection of hemodynamics, mitochondrial metabolism and light scattering changes during cortical spreading depression in rats based on multi-spectral optical imaging. - Cui Yin; Fangyuan Zhou; Yaru Wang; Weihua Luo; Qingming Luo; Pengcheng Li 003 (NeuroImage, 2013)

Coherent slow cortical potentials reveal a superior localization of resting-state functional connectivity using voltage-sensitive dye imaging. - Bing Li; Rui Liu 017; Qin Huang; Jinling Lu; Qingming Luo; Pengcheng Li 003 (NeuroImage, 2014)

Detection of optical neuronal signals in the visual cortex using continuous wave near-infrared spectroscopy. - Bailei Sun; Lei Zhang; Hui Gong; Jinyan Sun; Qingming Luo (NeuroImage, 2014)

3D BrainCV: Simultaneous visualization and analysis of cells and capillaries in a whole mouse brain with one-micron voxel resolution. - Jingpeng Wu; Yong He 002; Zhongqin Yang; Congdi Guo; Qingming Luo; Wei Zhou; Shangbin Chen; Anan Li; Benyi Xiong; Tao Jiang; Hui Gong (NeuroImage, 2014)

An Automatic Method for Nucleus Boundary Segmentation Based on a Closed Cubic Spline. - Zhao Feng; Anan Li; Hui Gong; Qingming Luo (Frontiers Neuroinformatics, 2016)

Skull Optical Clearing Solution for Enhancing Ultrasonic and Photoacoustic Imaging. - Xiaoquan Yang; Yang Zhang; Kai Zhao; Yanjie Zhao 002; Yanyan Liu; Hui Gong; Qingming Luo; Dan Zhu (IEEE Trans. Medical Imaging, 2016)

SparseTracer: the Reconstruction of Discontinuous Neuronal Morphology in Noisy Images. - Shiwei Li; Hang Zhou; Tingwei Quan; Jing Li; Yuxin Li; Anan Li; Qingming Luo; Hui Gong; Shaoqun Zeng (Neuroinformatics, 2017)

Multisynchronization of Interconnected Memristor-Based Impulsive Neural Networks With Fuzzy Hybrid Control. - Bin Hu 008; Zhi-Hong Guan; Xinghuo Yu 001; Qingming Luo (IEEE Trans. Fuzzy Syst., 2018)

DeepBouton: Automated Identification of Single-Neuron Axonal Boutons at the Brain-Wide Scale. - Shenghua Cheng; Xiaojun Wang; Yurong Liu; Lei Su; Tingwei Quan; Ning Li; Fangfang Yin; Feng Xiong; Xiaomao Liu; Qingming Luo; Hui Gong; Shaoqun Zeng (Frontiers Neuroinformatics, 2019)

Challenges of Processing and Analyzing Big Data in Mesoscopic Whole-brain Imaging. - Anan Li; Yue Guan 001; Hui Gong; Qingming Luo (Genom. Proteom. Bioinform., 2019)

Identifying Weak Signals in Inhomogeneous Neuronal Images for Large-Scale Tracing of Sparsely Distributed Neurites. - Shiwei Li; Tingwei Quan; Hang Zhou; Fangfang Yin; Anan Li; Ling Fu; Qingming Luo; Hui Gong; Shaoqun Zeng (Neuroinformatics, 2019)

Skeleton optimization of neuronal morphology based on three-dimensional shape restrictions. - Siqi Jiang; Zhengyu Pan; Zhao Feng; Yue Guan 001; Miao Ren; Zhangheng Ding; Shangbin Chen; Hui Gong; Qingming Luo; Anan Li (BMC Bioinform., 2020)

Brain-Wide Shape Reconstruction of a Traced Neuron Using the Convex Image Segmentation Method. - Shiwei Li; Tingwei Quan; Hang Zhou; Qing Huang; Tao Guan; Yijun Chen; Cheng Xu; Hongtao Kang; Anan Li; Ling Fu; Qingming Luo; Hui Gong; et al. (Neuroinformatics, 2020)

Automated Brain Region Segmentation for Single Cell Resolution Histological Images Based on Markov Random Field. - Xiaofeng Xu; Yue Guan 001; Hui Gong; Zhao Feng; Wenjuan Shi; Anan Li; Miao Ren; Jing Yuan 007; Qingming Luo (Neuroinformatics, 2020)

Prospective Respiration-Gated Photoacoustic Microscopy. - Jianshuang Wei; Qun Wang; Xianlin Song; Qingming Luo; Xiaoquan Yang (IEEE Trans. Biomed. Eng., 2020)

DeepMapi: a Fully Automatic Registration Method for Mesoscopic Optical Brain Images Using Convolutional Neural Networks. - Hong Ni; Zhao Feng; Yue Guan 001; Xueyan Jia; Wu Chen; Tao Jiang; Qiuyuan Zhong; Jing Yuan 007; Miao Ren; Xiangning Li; Hui Gong; Qingming Luo; et al. (Neuroinformatics, 2021)

GTree: an Open-source Tool for Dense Reconstruction of Brain-wide Neuronal Population. - Hang Zhou; Shiwei Li; Anan Li; Qing Huang; Feng Xiong; Ning Li; Jiacheng Han; Hongtao Kang; Yijun Chen; Yun Li; Huimin Lin; Yu-Hui Zhang; et al. (Neuroinformatics, 2021)

Deep learning-based large-scale named entity recognition for anatomical region of mammalian brain. - Xiaokang Chai; Yachao Di; Zhao Feng; Yue Guan 001; Guoqing Zhang 006; Anan Li; Qingming Luo (Quant. Biol., 2022)

Data-Driven Morphological Feature Perception of Single Neuron With Graph Neural Network. - Tianfang Zhu; Gang Yao; Dongli Hu; Chuangchuang Xie; Pengcheng Li 003; Xiaoquan Yang; Hui Gong; Qingming Luo; Anan Li (IEEE Trans. Medical Imaging, 2023)

Graph-based cell pattern recognition for merging the multi-modal optical microscopic image of neurons. - Wenwei Li; Wu Chen; Zimin Dai; Xiaokang Chai; Sile An; Zhuang Guan; Wei Zhou; Jianwei Chen; Hui Gong; Qingming Luo; Zhao Feng; Anan Li (Comput. Methods Programs Biomed., 2024)

A hierarchically annotated dataset drives tangled filament recognition in digital neuron reconstruction. - Wu Chen; Mingwei Liao; Shengda Bao; Sile An; Wenwei Li; Xin Liu; Ganghua Huang; Hui Gong; Qingming Luo; Chi Xiao; Anan Li (Patterns, 2024)

Convergent and divergent connectivity patterns of the arcuate fasciculus in macaques and humans. - Jiahao Huang; Ruifeng Li; Wenwen Yu; Anan Li; Xiangning Li; Mingchao Yan; Lei Xie 001; Qingrun Zeng; Xueyan Jia; Shuxin Wang; Ronghui Ju; Feng Chen; et al. (CoRR, 2025)