Kernel K-Local Hyperplanes for Predicting Protein-Protein Interactions. - Qingshan Ni; Zhengzhi Wang; Xiaomin Wang (ICNC (5), 2008)

Computational Features Evaluation for RNA Secondary Structure Prediction. - Yingjie Zhao; Qingshan Ni; Zhengzhi Wang (BMEI, 2009)

Dependence of the Impact Response of Polyvinylidene Fluoride Sensors on Their Supporting Materials' Elasticity. - Yunfang Jia; Xinjuan Chen; Qingshan Ni; Longhua Li; Cheng Ju (Sensors, 2013)

EBGW_OMP: A sequence-based method for accurate prediction of outer membrane proteins. - Lingyun Zou; Qingshan Ni; Fuquan Hu (CIBCB, 2014)

Accurate Discrimination of outer membrane proteins using secondary Structure Element Alignment and Support Vector Machine. - Qingshan Ni; Lingyun Zou (J. Bioinform. Comput. Biol., 2014)

TIPS: trajectory inference of pathway significance through pseudotime comparison for functional assessment of single-cell RNAseq data. - Zihan Zheng; Xin Qiu; Haiyang Wu; Ling Chang; Xiangyu Tang; Liyun Zou; Jingyi Li; Yuzhang Wu; Jianzhi Zhou; Shan Jiang; Ying Wan; Qingshan Ni (Briefings Bioinform., 2021)

Screening single-cell trajectories via continuity assessments for cell transition potential. - Zihan Zheng; Ling Chang; Yinong Li; Kun Liu; Jie Mu; Song Zhang; Jingyi Li; Yuzhang Wu; Liyun Zou; Qingshan Ni; Ying Wan (Briefings Bioinform., 2023)