Predictive modeling of plant messenger RNA polyadenylation sites. - Guoli Ji; Jianti Zheng; Yingjia Shen; Xiaohui Wu; Ronghan Jiang; Yun Lin; Johnny C. Loke; Kimberly M. Davis; Greg J. Reese; Qingshun Quinn Li (BMC Bioinform., 2007)

PROBER: Segmentation and Differential Analysis Tool for Tiling Microarray Data. - Guoli Ji; Xiaohui Wu; Denghui Xing; Qingshun Quinn Li (BMEI, 2009)

Messenger RNA Polyadenylation Site Recognition in Green Alga Chlamydomonas Reinhardtii. - Guoli Ji; Xiaohui Wu; Qingshun Quinn Li; Jianti Zheng (ISNN (1), 2010)

Addressing the unmet need for visualizing conditional random fields in biological data. - William C. Ray; Samuel L. Wolock; Nicholas W. Callahan; Min Dong; Qingshun Quinn Li; Chun Liang; Thomas J. Magliery; Christopher W. Bartlett (BMC Bioinform., 2014)

Genome-wide identification and predictive modeling of polyadenylation sites in eukaryotes. - Guoli Ji; Jinting Guan; Yong Zeng; Qingshun Quinn Li; Xiaohui Wu (Briefings Bioinform., 2015)

PASPA: a web server for mRNA poly(A) site predictions in plants and algae. - Guoli Ji; Lei Li; Qingshun Quinn Li; Xiangdong Wu; Jingyi Fu; Gong Chen; Xiaohui Wu (Bioinform., 2015)

VAAPA: A web platform for visualization and analysis of alternative polyadenylation. - Jinting Guan; Jingyi Fu; Mingcheng Wu; Longteng Chen; Guoli Ji; Qingshun Quinn Li; Xiaohui Wu (Comput. Biol. Medicine, 2015)

APAtrap: identification and quantification of alternative polyadenylation sites from RNA-seq data. - Congting Ye; Yuqi Long; Guoli Ji; Qingshun Quinn Li; Xiaohui Wu (Bioinform., 2018)

scDAPA: detection and visualization of dynamic alternative polyadenylation from single cell RNA-seq data. - Congting Ye; Qian Zhou; Xiaohui Wu; Chen Yu 007; Guoli Ji; Daniel R. Saban; Qingshun Quinn Li (Bioinform., 2020)

QuantifyPoly(A): reshaping alternative polyadenylation landscapes of eukaryotes with weighted density peak clustering. - Congting Ye; Danhui Zhao; Wenbin Ye 002; Xiaohui Wu; Guoli Ji; Qingshun Quinn Li; Juncheng Lin (Briefings Bioinform., 2021)