scIAE: an integrative autoencoder-based ensemble classification framework for single-cell RNA-seq data. - Qingyang Yin; Yang Wang; Jinting Guan; Guoli Ji (Briefings Bioinform., 2022)

CellTICS: an explainable neural network for cell-type identification and interpretation based on single-cell RNA-seq data. - Qingyang Yin; Liang Chen (Briefings Bioinform., 2023)

Proxy Tracing: Unbiased Reciprocal Estimation for Optimized Sampling in BDPT. - Fujia Su; Bingxuan Li; Qingyang Yin; Yanchen Zhang; Sheng Li 008 (ACM Trans. Graph., 2024)