gwSPIA: Improved Signaling Pathway Impact Analysis With Gene Weights. - Zhenshen Bao; Yihua Zhu; Qinyu Ge; Wanjun Gu; Xianjun Dong; Yunfei Bai (IEEE Access, 2019)

Signaling Pathway Analysis Combined With the Strength Variations of Interactions Between Genes Under Different Conditions. - Zhenshen Bao; Yihua Zhu; Qinyu Ge; Wanjun Gu; Xianjun Dong; Yunfei Bai (IEEE Access, 2020)

iATMEcell: identification of abnormal tumor microenvironment cells to predict the clinical outcomes in cancer based on cell-cell crosstalk network. - Yuqi Sheng; Jiashuo Wu; Xiangmei Li; Jiayue Qiu; Ji Li; Qinyu Ge; Liang Cheng 006; Junwei Han 003 (Briefings Bioinform., 2023)

Research on the Data Quality Factors Affecting Single-Cell Type Analysis. - Weiheng Qian; Qinyu Ge (BIC, 2024)

Prediction of Transcription Factor Binding Sites on Cell-Free DNA Based on Deep Learning. - Ting Qi; Ying Zhou; Yuqi Sheng; Zhihui Li; Yuwei Yang; Quanjun Liu; Qinyu Ge (J. Chem. Inf. Model., 2024)

Deep-Cloud: A Deep Neural Network-Based Approach for Analyzing Differentially Expressed Genes of RNA-seq Data. - Ying Zhou; Ting Qi; Min Pan; Jing Tu; Xiangwei Zhao; Qinyu Ge; Zuhong Lu (J. Chem. Inf. Model., 2024)