RPML: A Learning-Based Approach for Reranking Protein-Spectrum Matches. - Qiong Duan; Hao Liang; Chaohua Sheng; Jun Wu; Bo Xu 009; Zengyou He (ICIC (1), 2018)

PCM: A Pairwise Correlation Mining Package for Biological Network Inference. - Hao Liang; Feiyang Gu; Chaohua Sheng; Qiong Duan; Bo Tian; Jun Wu; Bo Xu 008; Zengyou He (ICIC (2), 2018)

Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data. - Bo Tian; Qiong Duan; Can Zhao 007; Ben Teng; Zengyou He (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

SAEDF: A Synthetic Anomaly-Enhanced Detection Framework for Detection of Unknown Network Attacks. - Kai Liang; Chuanfeng Li; Qiong Duan (Inf. Technol. Control., 2025)