GAPIT: genome association and prediction integrated tool. - Alexander E. Lipka; Feng Tian; Qishan Wang 001; Jason Peiffer; Meng Li; Peter J. Bradbury; Michael A. Gore; Edward S. Buckler; Zhiwu Zhang 001 (Bioinform., 2012)

PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies. - Wenchao Zhang; Xinbin Dai; Qishan Wang 001; Shizhong Xu; Patrick Xuechun Zhao (PLoS Comput. Biol., 2016)

PyAGH: a python package to fast construct kinship matrices based on different levels of omic data. - Wei Zhao; Qamar Raza Qadri; Zhenyang Zhang; Zhen Wang; Yuchun Pan; Qishan Wang 001; Zhe Zhang (BMC Bioinform., 2023)