Mol2Context-vec: learning molecular representation from context awareness for drug discovery. - Qiujie Lv; Guanxing Chen; Lu Zhao; Weihe Zhong; Calvin Yu-Chian Chen (Briefings Bioinform., 2021)

VAERHNN: Voting-averaged ensemble regression and hybrid neural network to investigate potent leads against colorectal cancer. - Guanxing Chen; Xuefei Jiang; Qiujie Lv; Xiaojun Tan; Zihuan Yang; Calvin Yu-Chian Chen (Knowl. Based Syst., 2022)

Dynamic concept-aware network for few-shot learning. - Jun Zhou; Qiujie Lv; Calvin Yu-Chian Chen (Knowl. Based Syst., 2022)

MedAugment: Universal Automatic Data Augmentation Plug-in for Medical Image Analysis. - Zhaoshan Liu; Qiujie Lv; Yifan Li; Ziduo Yang; Lei Shen (CoRR, 2023)

Lightweight equivariant interaction graph neural network for accurate and efficient interatomic potential and force predictions. - Ziduo Yang; Xian Wang; Yifan Li; Qiujie Lv; Calvin Yu-Chian Chen; Lei Shen (CoRR, 2023)

3D graph neural network with few-shot learning for predicting drug-drug interactions in scaffold-based cold start scenario. - Qiujie Lv; Jun Zhou; Ziduo Yang; Haohuai He; Calvin Yu-Chian Chen (Neural Networks, 2023)

Recent progress in transformer-based medical image analysis. - Zhaoshan Liu; Qiujie Lv; Ziduo Yang; Yifan Li; Chau Hung Lee; Lei Shen (Comput. Biol. Medicine, 2023)

Segmenting medical images with limited data. - Zhaoshan Liu; Qiujie Lv; Chau Hung Lee; Lei Shen (Neural Networks, 2024)

GINCM-DTA: A graph isomorphic network with protein contact map representation for potential use against COVID-19 and Omicron subvariants BQ.1, BQ.1.1, XBB.1.5, XBB.1.16. - Guanxing Chen; Haohuai He; Lu Zhao; Qiujie Lv; Calvin Yu-Chian Chen (Expert Syst. Appl., 2024)

Meta Learning With Graph Attention Networks for Low-Data Drug Discovery. - Qiujie Lv; Guanxing Chen; Ziduo Yang; Weihe Zhong; Calvin Yu-Chian Chen (IEEE Trans. Neural Networks Learn. Syst., 2024)

Interaction-Based Inductive Bias in Graph Neural Networks: Enhancing Protein-Ligand Binding Affinity Predictions From 3D Structures. - Ziduo Yang; Weihe Zhong; Qiujie Lv; Tiejun Dong; Guanxing Chen; Calvin Yu-Chian Chen (IEEE Trans. Pattern Anal. Mach. Intell., 2024)

Multi-scale multi-object semi-supervised consistency learning for ultrasound image segmentation. - Saidi Guo; Zhaoshan Liu; Ziduo Yang; Chau Hung Lee; Qiujie Lv; Lei Shen (Neural Networks, 2025)

Meta-MolNet: A Cross-Domain Benchmark for Few Examples Drug Discovery. - Qiujie Lv; Guanxing Chen; Ziduo Yang; Weihe Zhong; Calvin Yu-Chian Chen (IEEE Trans. Neural Networks Learn. Syst., 2025)