HCCDB: A Database of Hepatocellular Carcinoma Expression Atlas. - Qiuyu Lian; Shicheng Wang; Guchao Zhang; Dongfang Wang; Guijuan Luo; Jing Tang; Lei Chen 089; Jin Gu (Genom. Proteom. Bioinform., 2018)

Artificial-cell-type aware cell-type classification in CITE-seq. - Qiuyu Lian; Hongyi Xin; Jianzhu Ma; Liza Konnikova; Wei Chen 074; Jin Gu; Kong Chen (Bioinform., 2020)

Modeling gene regulatory networks using neural network architectures. - Hantao Shu; Jingtian Zhou; Qiuyu Lian; Han Li 018; Dan Zhao 004; Jianyang Zeng 001; Jianzhu Ma (Nat. Comput. Sci., 2021)

TIST: Transcriptome and Histopathological Image Integrative Analysis for Spatial Transcriptomics. - Yiran Shan; Qian Zhang 099; Wenbo Guo 010; Yanhong Wu; Yuxin Miao; Hongyi Xin; Qiuyu Lian; Jin Gu (Genom. Proteom. Bioinform., 2022)

L2 Normalization and Geodesic Distance for Enhanced Information Preservation in Visualizing High-dimensional Single-cell Sequencing Data. - Ziqi Rong; Jinpu Cai; Jiahao Qiu; Pengcheng Xu; Lana X. Garmire; Qiuyu Lian; Hongyi Xin (BCB, 2024)

HCCDB v2.0: Decompose Expression Variations by Single-cell RNA-seq and Spatial Transcriptomics in HCC. - Ziming Jiang; Yanhong Wu; Yuxin Miao; Kaige Deng; Fan Yang; Shuhuan Xu; Yupeng Wang; Renke You; Lei Zhang; Yuhan Fan; Wenbo Guo 010; Qiuyu Lian; et al. (Genom. Proteom. Bioinform., 2024)