Thalamo-Cortical Connectivity: What Can Diffusion Tractography Tell Us About Reading Difficulties in Children? - Qiuyun Fan; Nicole Davis; Adam W. Anderson; Laurie E. Cutting (Brain Connect., 2014)

Investigating the Capability to Resolve Complex White Matter Structures with High b-Value Diffusion Magnetic Resonance Imaging on the MGH-USC Connectom Scanner. - Qiuyun Fan; Aapo Nummenmaa; Thomas Witzel; Roberta Zanzonico; Boris Keil; Stephen F. Cauley; Jonathan R. Polimeni; M. Dylan Tisdall; Koene R. A. Van Dijk; Randy L. Buckner; Van J. Wedeen; Bruce R. Rosen; et al. (Brain Connect., 2014)

MGH-USC Human Connectome Project datasets with ultra-high b-value diffusion MRI. - Qiuyun Fan; Thomas Witzel; Aapo Nummenmaa; Koene R. A. Van Dijk; John D. Van Horn; Michelle K. Drews; Leah H. Somerville; Margaret A. Sheridan; Rosario M. Santillana; Jenna Snyder; Trey Hedden; Emily E. Shaw; et al. (NeuroImage, 2016)

Early axonal damage in normal appearing white matter in multiple sclerosis: Novel insights from multi-shell diffusion MRI. - Silvia De Santis; Tobias Granberg; Russell Ouellette; Constantina A. Treaba; Qiuyun Fan; Elena Herranz; Caterina Mainero; Nicola Toschi (EMBC, 2017)

HIgh b-value and high Resolution Integrated Diffusion (HIBRID) imaging. - Qiuyun Fan; Aapo Nummenmaa; Jonathan R. Polimeni; Thomas Witzel; Susie Yi Huang; Van J. Wedeen; Bruce R. Rosen; Lawrence L. Wald (NeuroImage, 2017)

Validation of diffusion MRI estimates of compartment size and volume fraction in a biomimetic brain phantom using a human MRI scanner with 300 mT/m maximum gradient strength. - Qiuyun Fan; Aapo Nummenmaa; Barbara Wichtmann; Thomas Witzel; Choukri Mekkaoui; Walter Schneider; Lawrence L. Wald; Susie Yi Huang (NeuroImage, 2018)

Age-related alterations in axonal microstructure in the corpus callosum measured by high-gradient diffusion MRI. - Qiuyun Fan; Qiyuan Tian; Ned A. Ohringer; Aapo Nummenmaa; Thomas Witzel; Sean M. Tobyne; Eric C. Klawiter; Choukri Mekkaoui; Bruce R. Rosen; Lawrence L. Wald; David H. Salat; Susie Yi Huang (NeuroImage, 2019)

Phase-matched virtual coil reconstruction for highly accelerated diffusion echo-planar imaging. - Congyu Liao; Mary Kate Manhard; Berkin Bilgic; Qiyuan Tian; Qiuyun Fan; Sohyun Han; Fuyixue Wang; Daniel Joseph Park; Thomas Witzel; Jianhui Zhong; Haifeng Wang 003; Lawrence L. Wald; et al. (NeuroImage, 2019)

Axon diameter index estimation independent of fiber orientation distribution using high-gradient diffusion MRI. - Qiuyun Fan; Aapo Nummenmaa; Thomas Witzel; Ned A. Ohringer; Qiyuan Tian; Kawin Setsompop; Eric C. Klawiter; Bruce R. Rosen; Lawrence L. Wald; Susie Yi Huang (NeuroImage, 2020)

Registration-free analysis of diffusion MRI tractography data across subjects through the human lifespan. - Viviana Siless; Juliet Y. Davidow; Jared Nielsen; Qiuyun Fan; Trey Hedden; Marisa O. Hollinshead; Elizabeth Beam; Constanza M. Vidal Bustamante; Megan C. Garrad; Rosario M. Santillana; Emily E. Smith; Aya Hamadeh; et al. (NeuroImage, 2020)

DeepDTI: High-fidelity six-direction diffusion tensor imaging using deep learning. - Qiyuan Tian; Berkin Bilgic; Qiuyun Fan; Congyu Liao; Chanon Ngamsombat; Yuxin Hu; Thomas Witzel; Kawin Setsompop; Jonathan R. Polimeni; Susie Yi Huang (NeuroImage, 2020)

SRDTI: Deep learning-based super-resolution for diffusion tensor MRI. - Qiyuan Tian; Ziyu Li; Qiuyun Fan; Chanon Ngamsombat; Yuxin Hu; Congyu Liao; Fuyixue Wang; Kawin Setsompop; Jonathan R. Polimeni; Berkin Bilgic; Susie Yi Huang (CoRR, 2021)

Quantifying the uncertainty of neural networks using Monte Carlo dropout for deep learning based quantitative MRI. - Mehmet Yigit Avci; Ziyu Li; Qiuyun Fan; Susie Yi Huang; Berkin Bilgic; Qiyuan Tian (CoRR, 2021)

Scan-rescan repeatability of axonal imaging metrics using high-gradient diffusion MRI and statistical implications for study design. - Qiuyun Fan; Maya N. Polackal; Qiyuan Tian; Chanon Ngamsombat; Aapo Nummenmaa; Thomas Witzel; Eric C. Klawiter; Susie Yi Huang (NeuroImage, 2021)

Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. - Susie Yi Huang; Thomas Witzel; Boris Keil; Alina Scholz; Mathias Davids; Peter Dietz; Elmar Rummert; Rebecca Ramb; John E. Kirsch; Anastasia Yendiki; Qiuyun Fan; Qiyuan Tian; et al. (NeuroImage, 2021)

Improved cortical surface reconstruction using sub-millimeter resolution MPRAGE by image denoising. - Qiyuan Tian; Natalia Zaretskaya; Qiuyun Fan; Chanon Ngamsombat; Berkin Bilgic; Jonathan R. Polimeni; Susie Yi Huang (NeuroImage, 2021)

Mapping the human connectome using diffusion MRI at 300 mT/m gradient strength: Methodological advances and scientific impact. - Qiuyun Fan; Cornelius Eichner; Maryam Afzali; Lars Mueller 008; Chantal M. W. Tax; Mathias Davids; Mirsad Mahmutovic; Boris Keil; Berkin Bilgic; Kawin Setsompop; Hong-Hsi Lee; Qiyuan Tian; et al. (NeuroImage, 2022)

Estimating axial diffusivity in the NODDI model. - Amy F. D. Howard; Michiel Cottaar; Mark Drakesmith; Qiuyun Fan; Susie Yi Huang; Derek K. Jones; Frederik J. Lange; Jeroen Mollink; Suryanarayana Umesh Rudrapatna; Qiyuan Tian; Karla L. Miller; Saâd Jbabdi (NeuroImage, 2022)

SDnDTI: Self-supervised deep learning-based denoising for diffusion tensor MRI. - Qiyuan Tian; Ziyu Li; Qiuyun Fan; Jonathan R. Polimeni; Berkin Bilgic; David H. Salat; Susie Yi Huang (NeuroImage, 2022)

Diffusion MRI data analysis assisted by deep learning synthesized anatomical images (DeepAnat). - Ziyu Li; Qiuyun Fan; Berkin Bilgic; Guangzhi Wang; Wenchuan Wu 003; Jonathan R. Polimeni; Karla L. Miller; Susie Yi Huang; Qiyuan Tian (Medical Image Anal., 2023)

Enhance the Image: Super Resolution using Artificial Intelligence in MRI. - Ziyu Li; Zihan Li; Haoxiang Li; Qiuyun Fan; Karla L. Miller; Wenchuan Wu 003; Akshay S. Chaudhari; Qiyuan Tian (CoRR, 2024)

Sub-DM:Subspace Diffusion Model with Orthogonal Decomposition for MRI Reconstruction. - Yu Guan; Qinrong Cai; Wei Li; Qiuyun Fan; Dong Liang 001; Qiegen Liu (CoRR, 2024)

In vivo cortical microstructure mapping using high-gradient diffusion MRI accounting for intercompartmental water exchange effects. - Tanxin Dong; Hong-Hsi Lee; Han Zang; Hansol Lee; Qiyuan Tian; Liang Wan; Qiuyun Fan; Susiey Huang (NeuroImage, 2025)

Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning. - Qiyuan Tian; Chanon Ngamsombat; Hong-Hsi Lee; Daniel R. Berger; Yuelong Wu; Qiuyun Fan; Berkin Bilgic; Ziyu Li; Dmitry S. Novikov; Els Fieremans; Bruce R. Rosen; Jeff W. Lichtman; et al. (NeuroImage, 2025)

Adaptive Mask-guided K-space Diffusion for Accelerated MRI Reconstruction. - Qinrong Cai; Yu Guan; Zhibo Chen 013; Dong Liang 001; Qiuyun Fan; Qiegen Liu (CoRR, 2025)