Application of latent semantic analysis to protein remote homology detection. - Qiwen Dong; Xiaolong Wang 001; Lei Lin 001 (Bioinform., 2006)

Novel knowledge-based mean force potential at the profile level. - Qiwen Dong; Xiaolong Wang 001; Lei Lin 001 (BMC Bioinform., 2006)

Domain boundary prediction based on profile domain linker propensity index. - Qiwen Dong; Xiaolong Wang 001; Lei Lin 001; Zhiming Xu (Comput. Biol. Chem., 2006)

Protein Remote Homology Detection Based on Binary Profiles. - Qiwen Dong; Lei Lin 001; Xiaolong Wang 001 (BIRD, 2007)

Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins. - Qiwen Dong; Xiaolong Wang 001; Lei Lin 001; Yi Guan (BMC Bioinform., 2007)

Methods for optimizing the structure alphabet sequences of proteins. - Qiwen Dong; Xiaolong Wang 001; Lei Lin 001 (Comput. Biol. Medicine, 2007)

A Discriminative Method for Protein Remote Homology Detection Based on N-nary Profiles. - Bin Liu 014; Lei Lin 001; Xiaolong Wang 001; Qiwen Dong; Xuan Wang 002 (BIRD, 2008)

A discriminative method for protein remote homology detection and fold recognition combining Top-n-grams and latent semantic analysis. - Bin Liu 014; Xiaolong Wang 001; Lei Lin 001; Qiwen Dong; Xuan Wang 002 (BMC Bioinform., 2008)

Empirical Probability Functions Derived from Dihedral Angles for Protein Structure Prediction. - Qiwen Dong; Xin Geng; Shuigeng Zhou; Jihong Guan (BIBE, 2009)

Improving Prediction of the Contact Numbers of Residues in Proteins from Primary Sequences. - Qiwen Dong; Shuigeng Zhou; Jihong Guan (IJCBS, 2009)

A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation. - Qiwen Dong; Shuigeng Zhou; Jihong Guan (Bioinform., 2009)

Prediction of protein-protein interaction sites using an ensemble method. - Lei Deng 002; Jihong Guan; Qiwen Dong; Shuigeng Zhou (BMC Bioinform., 2009)

Prediction of protein binding sites in protein structures using hidden Markov support vector machine. - Bin Liu 014; Xiaolong Wang 001; Lei Lin 001; Buzhou Tang; Qiwen Dong; Xuan Wang 002 (BMC Bioinform., 2009)

Exploiting three kinds of interface propensities to identify protein binding sites. - Bin Liu 014; Xiaolong Wang 001; Lei Lin 001; Qiwen Dong; Xuan Wang 002 (Comput. Biol. Chem., 2009)

Prediction of protein - protein interactions from primary sequences. - Qiwen Dong; Shuigeng Zhou; Xuan Liu (Int. J. Data Min. Bioinform., 2010)

Protein remote homology detection based on auto-cross covariance transformation. - Xuan Liu; Lijie Zhao; Qiwen Dong (Comput. Biol. Medicine, 2011)

A machine learning-based method for protein global model quality assessment. - Qiwen Dong; Yufei Chen 005; Shuigeng Zhou (Int. J. Gen. Syst., 2011)

A conversation with Professor Ruqian Lu et al. - Shuigeng Zhou; Caiyan Jia; Fei Wang; Qiwen Dong; Shanfeng Zhu; Ruqian Lu (SIGKDD Explor., 2011)

Novel Nonlinear Knowledge-Based Mean Force Potentials Based on Machine Learning. - Qiwen Dong; Shuigeng Zhou (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

An improved genetic algorithm for statistical potential function design and protein structure prediction. - Xin Geng; Jihong Guan; Qiwen Dong; Shuigeng Zhou (Int. J. Data Min. Bioinform., 2012)

Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. - Bin Liu 014; Deyuan Zhang; Ruifeng Xu 001; Jinghao Xu; Xiaolong Wang 001; Qingcai Chen; Qiwen Dong; Kuo-Chen Chou (Bioinform., 2014)

Identification of DNA-binding proteins by auto-cross covariance transformation. - Qiwen Dong; Shanyi Wang; Kai Wang; Xuan Liu; Bin Liu (BIBM, 2015)

Protein model quality assessment by learning-to-rank. - Xiaoyang Jing; Qiwen Dong; Xuan Liu; Bin Liu (BIBM, 2015)

Improved protein residue-residue contacts prediction using learning-to-rank. - Xiaoyang Jing; Qiwen Dong (BIBM, 2016)

Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals. - Xiuzhen Hu; Qiwen Dong; Jianyi Yang 002; Yang Zhang 040 (Bioinform., 2016)

Protein ligand-specific binding residue predictions by an ensemble classifier. - Xiuzhen Hu; Kai Wang; Qiwen Dong (BMC Bioinform., 2016)

Identifying the missing proteins in human proteome by biological language model. - Qiwen Dong; Kai Wang; Xuan Liu (BMC Syst. Biol., 2016)

MQAPRank: improved global protein model quality assessment by learning-to-rank. - Xiaoyang Jing; Qiwen Dong (BMC Bioinform., 2017)

RRCRank: a fusion method using rank strategy for residue-residue contact prediction. - Xiaoyang Jing; Qiwen Dong; Ruqian Lu (BMC Bioinform., 2017)

CSSSketch2Code: An Automatic Method to Generate Web Pages with CSS Style. - Yi Han; Jun He; Qiwen Dong (ICAAI, 2018)

Predicting protein-ligand binding residues with deep convolutional neural networks. - Yifeng Cui; Qiwen Dong; Daocheng Hong; Xikun Wang (BMC Bioinform., 2019)

Biological Language Model - Theory and Application - Qiwen Dong; Xiaoyang Jing; Aoying Zhou; Xiuzhen Hu (Biological Language Model, 2020)

Role and Object Domain-Based Access Control Model for Graduate Education Information System. - Gangzeng Jin; Daojiang Wang; Dawei Yang; Daocheng Hong; Qiwen Dong; Ye Wang (KES, 2020)

Humming-Query and Reinforcement-Learning based Modeling Approach for Personalized Music Recommendation. - Dezhuang Miao; Xuesong Lu; Qiwen Dong; Daocheng Hong (KES, 2020)

A Novel Application of Educational Management Information System based on Micro Frontends. - Daojiang Wang; Dongming Yang; Huan Zhou; Ye Wang; Daocheng Hong; Qiwen Dong; Shubing Song (KES, 2020)

DevOps in Practice for Education Management Information System at ECNU. - Dawei Yang; Daojiang Wang; Dongming Yang; Qiwen Dong; Ye Wang; Huan Zhou; Daocheng Hong (KES, 2020)

A novel application integration architecture for the education industry. - Dongming Yang; Daojiang Wang; Huan Zhou; Ye Wang; Shubing Song; Qiwen Dong (KES, 2020)

Nonintrusive-Sensing and Reinforcement-Learning Based Adaptive Personalized Music Recommendation. - Daocheng Hong; Yang Li; Qiwen Dong (SIGIR, 2020)

Amino Acid Encoding Methods for Protein Sequences: A Comprehensive Review and Assessment. - Xiaoyang Jing; Qiwen Dong; Daocheng Hong; Ruqian Lu (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Regression Algorithm Based on Self-Distillation and Ensemble Learning. - Yaqi Li; Qiwen Dong; Gang Liu (CSAI, 2021)

Service-Oriented Data Processing for Dynamic Schema. - Zixin Chen; Huan Zhou; Zeqiu Fan; Ye Wang; Daocheng Hong; Qiwen Dong (KES, 2021)

Design and Implementation of Scientific Research Big Data Service Platform for Experimental Data Managing. - Zeqiu Fan; Huan Zhou; Zixin Chen; Daocheng Hong; Ye Wang; Qiwen Dong (KES, 2021)

Application of access control model for confidential data. - Lumin Shan; Huan Zhou; Daocheng Hong; Qiwen Dong; Ye Wang; Shubing Song (KES, 2021)

Supervised Multi-view Latent Space Learning by Jointly Preserving Similarities Across Views and Samples. - Xiaoyang Li; Martin Pavlovski; Fang Zhou; Qiwen Dong; Weining Qian; Zoran Obradovic (DASFAA (2), 2022)

An Exploratory Approach to Intelligent Quiz Question Recommendation. - Kejie Mao; Qiwen Dong; Ye Wang; Daocheng Hong (KES, 2022)

Dynamic self-paced sampling ensemble for highly imbalanced and class-overlapped data classification. - Fang Zhou; Suting Gao; Lyu Ni; Martin Pavlovski; Qiwen Dong; Zoran Obradovic; Weining Qian (Data Min. Knowl. Discov., 2022)

Scalable and adaptive log manager in distributed systems. - Huan Zhou; Weining Qian; Xuan Zhou 001; Qiwen Dong; Aoying Zhou; Wenrong Tan (Frontiers Comput. Sci., 2022)

Job Title Prediction as a Dual Task of Expertise Prediction in Open Source Software. - Xin Liu; Yu Wang; Qiwen Dong; Xuesong Lu (ECML/PKDD (10), 2024)

AutoTable: Effective and Efficient Automated Feature Transformation for Tabular Data. - Shanshan Huang; Junpeng Zhu; Fengyan Zhang; Peng Cai; Qiwen Dong (WISE (1), 2024)

Model-Accuracy Aware Query Routing for Smart Logistics Service. - Shanshan Huang; Zhiwei Ye; Peng Cai; Qiwen Dong (ICDE, 2025)