A randomized algorithm for aligning DNA sequences to reference genomes. - Nam S. Vo; Quang Tran 002; Nobal B. Niraula; Vinhthuy Phan (ICCABS, 2013)

How genome complexity can explain the hardness of aligning reads to genomes. - Vinhthuy T. Phan; Shanshan Gao; Quang Tran 002; Nam S. Vo (ICCABS, 2014)

Alignment of short reads to multiple genomes using hashing. - Quang Tran 002; Vinhthuy Phan (BMC Bioinform., 2014)

An integrated approach for SNP calling based on population of genomes. - Nam S. Vo; Quang Tran 002; Vinhthuy Phan (BMC Bioinform., 2014)

How genome complexity can explain the difficulty of aligning reads to genomes. - Vinhthuy Phan; Shanshan Gao; Quang Tran 002; Nam S. Vo (BMC Bioinform., 2015)

A linear model for predicting performance of short-read aligners using genome complexity. - Quang Tran 002; Shanshan Gao; Nam S. Vo; Vinhthuy Phan (BMC Bioinform., 2015)

Analysis of optimal alignments unfolds aligners' bias in existing variant profiles. - Quang Tran 002; Shanshan Gao; Vinhthuy Phan (BMC Bioinform., 2016)

Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities. - Quang Tran 002; Diem-Trang Pham; Vinhthuy Phan (BMC Bioinform., 2017)

Active Learning: The Almost Silver Bullet. - Eric Hicks; Quang Tran 002; Kriangsiri Malasri; Nam Sy Vo; Vinhthuy Phan (KSE, 2020)

Analysis of Short-read Aligners using Genome Sequence Complexity. - Quang Tran 002; Nam Sy Vo; Eric Hicks; Tin Chi Nguyen; Vinhthuy Phan (KSE, 2020)

LongAGE: defining breakpoints of genomic structural variants through optimal and memory efficient alignments of long reads. - Quang Tran 002; Alexej Abyzov (Bioinform., 2021)