HINT: A new way to measure computer performance. - John L. Gustafson; Quinn Snell (HICSS (2), 1995)

An Analytical Model of the HINT Performance Metric. - Quinn Snell; John L. Gustafson (SC, 1996)

Parallel Hierarchical Global Illumination. - Quinn Snell; John L. Gustafson (HPDC, 1997)

The DOGMA Approach to High-Utilization Supercomputing. - Glenn Judd; Mark J. Clement; Quinn Snell (HPDC, 1998)

DOGMA: distributed object group metacomputing architecture. - Glenn Judd; Mark J. Clement; Quinn Snell (Concurr. Pract. Exp., 1998)

Parallel Algorithm and Processor Selection Based on Fuzzy Logic. - Shuling Yu; Mark J. Clement; Quinn Snell; Bryan S. Morse (HPCN Europe, 1999)

A Performance Broker for CORBA. - Kevin Butler; Mark J. Clement; Quinn Snell (HPDC, 1999)

High Performance Phylogenetic Inference. - Mark J. Clement; Quinn Snell; Glenn Judd; Michael Whiting (HPDC, 1999)

High Performance Computing for the Masses. - Mark J. Clement; Quinn Snell; Glenn Judd (IPPS/SPDP Workshops, 1999)

Design Issues for Efficient Implementation of MPI in Java. - Glenn Judd; Mark J. Clement; Quinn Snell; Vladimir Getov (Java Grande, 1999)

High Performance Scheduling for Windows NT. - Mark J. Clement; Quinn Snell; David B. Jackson; David Ashton (PDPTA, 1999)

The DOGMA Approach to Parallel and Distributed Computing. - Quinn Snell; Glenn Judd; Mark J. Clement (Parallel Distributed Comput. Pract., 1999)

Application Placement using Performance Surfaces. - André Turgeon; Quinn Snell; Mark J. Clement (HPDC, 2000)

The Performance Impact of Advance Reservation Meta-scheduling. - Quinn Snell; Mark J. Clement; David B. Jackson; Chad Gregory (JSSPP, 2000)

Parallel Phylogenetic Inference. - Quinn Snell; Michael Whiting; Mark J. Clement; David McLaughlin (SC, 2000)

Livelock Avoidance for Meta-Schedulers. - John Jardine; Quinn Snell; Mark J. Clement (HPDC, 2001)

Improving Cluster Utilization through Set Based Allocation Policies. - David B. Jackson; Brian D. Haymore; Julio C. Facelli; Quinn Snell (ICPP Workshops, 2001)

Simulation Based HPC Workload Analysis. - David B. Jackson; Heather L. Jackson; Quinn Snell (IPDPS, 2001)

Core Algorithms of the Maui Scheduler. - David B. Jackson; Quinn Snell; Mark J. Clement (JSSPP, 2001)

The YGuard access control model: set-based access control. - Ty van den Akker; Quinn Snell; Mark J. Clement (SACMAT, 2001)

Object Placement Using Performance Surfaces. - André Turgeon; Quinn Snell; Mark J. Clement (Clust. Comput., 2001)

An Enterprise-Based Grid Resource Management System. - Quinn Snell; Kevin Tew; Joseph J. Ekstrom; Mark J. Clement (HPDC, 2002)

TCS: Estimating Gene Genealogies. - Mark J. Clement; Quinn Snell; Peter Walker; David Posada; Keith A. Crandall (IPDPS, 2002)

Preemption Based Backfill. - Quinn Snell; Mark J. Clement; David B. Jackson (JSSPP, 2002)

A Survivable Multi-agent Approach to Network Routing. - Casey T. Deccio; Mark J. Clement; Quinn Snell (Communications in Computing, 2004)

Aggressive telecommunications overbooking ratios. - Robert Ball; Mark J. Clement; Feng Huang; Quinn Snell; Casey T. Deccio (IPCCC, 2004)

Prioritized Multiplicative Schwarz Procedures for Solving Linear Systems. - David Wingate; Nathaniel Powell; Quinn Snell; Kevin D. Seppi (IPDPS, 2005)

Large Grain Size Stochastic Optimization Alignment. - Perry G. Ridge; Hyrum Carroll; Dan Sneddon; Mark J. Clement; Quinn Snell (BIBE, 2006)

Jumpstarting phylogenetic analysis. - Jesse Mecham; Mark J. Clement; Quinn Snell; Todd Freestone; Kevin D. Seppi; Keith A. Crandall (Int. J. Bioinform. Res. Appl., 2006)

Using Parsimony to Guide Maximum Likelihood Searches. - Kenneth Sundberg; Timothy O'Connor; Hyrum Carroll; Mark J. Clement; Quinn Snell (BIBE, 2007)

Analyzing Gene Relationships for Down Syndrome with Labeled Transition Graphs. - Neha Rungta; Hyrum Carroll; Eric G. Mercer; Randall J. Roper; Mark J. Clement; Quinn Snell (FMCAD, 2007)

DNA reference alignment benchmarks based on tertiary structure of encoded proteins. - Hyrum Carroll; Wesley A. Beckstead; Timothy O'Connor; Mark T. W. Ebbert; Mark J. Clement; Quinn Snell; David A. McClellan (Bioinform., 2007)

Phylogenies scores for exhaustive searches and parsimony scores searches. - Hyrum Carroll; Perry G. Ridge; Mark J. Clement; Quinn Snell (Int. J. Bioinform. Res. Appl., 2007)

Incomparability of Results Between Phylogenetic Search Programs. - Kenneth Sundberg; Hyrum Carroll; Quinn Snell; Mark J. Clement (BIOCOMP, 2008)

Genomic Scale Reconstruction of Gene Regulatory Networks from Microarray Data. - Kenneth Sundberg; Daniel Ence; Daniel Wilcox; Quinn Snell; Mark J. Clement (BIOCOMP, 2008)

Qnet: A Modular Architecture for Reconfigurable Computing. - Scott Lloyd; Quinn Snell (ERSA, 2008)

Sequence Alignment with Traceback on Reconfigurable Hardware. - Scott Lloyd; Quinn Snell (ReConFig, 2008)

Parsimony accelerated Maximum Likelihood searches. - Kenneth Sundberg; Timothy O'Connor; Hyrum Carroll; Mark J. Clement; Quinn Snell (Int. J. Comput. Biol. Drug Des., 2008)

ChemAlign: Biologically Relevant Multiple Sequence Alignment Using Physicochemical Properties. - Hyrum Carroll; Mark J. Clement; Quinn Snell; David A. McClellan (BIBM, 2009)

Analysis of Long Branch Extraction. - Timothy O'Connor; Kenneth Sundberg; Hyrum Carroll; Mark J. Clement; Quinn Snell (BIOCOMP, 2009)

Inferring Gene Regulatory Networks from Asynchronous Microarray Data. - David Oviatt; Mark J. Clement; Quinn Snell; Kenneth Sundberg; Jared Allen; Randall J. Roper (BIOCOMP, 2009)

Visualizing Phylogenetic Treespace Using Cartographic Projections. - Kenneth Sundberg; Mark J. Clement; Quinn Snell (WABI, 2009)

An open source phylogenetic search and alignment package. - Hyrum Carroll; Adam R. Teichert; Jonathan Krein; Kenneth Sundberg; Quinn Snell; Mark J. Clement (Int. J. Bioinform. Res. Appl., 2009)

Hardware Accelerated Sequence Alignment with Traceback. - Scott Lloyd; Quinn Snell (Int. J. Reconfigurable Comput., 2009)

A packet-switched network architecture for reconfigurable computing. - Scott Lloyd; Quinn Snell (ACM Trans. Embed. Comput. Syst., 2009)

Spatially Indexing Sequences using Hashes. - Mike Eagar; Mark J. Clement; Quinn Snell (BIOCOMP, 2010)

The Impact of Equally-Optimal Pairwise Alignments. - Lukas Olson; Mark J. Clement; Quinn Snell (BIOCOMP, 2010)

On the use of cartographic projections in visualizing phylo-genetic tree space. - Kenneth Sundberg; Mark J. Clement; Quinn Snell (Algorithms Mol. Biol., 2010)

PathGen: a transitive gene pathway generator. - Kendell Clement; Nathaniel Gustafson; Amanda Berbert; Hyrum Carroll; Christopher Merris; Ammon Olsen; Mark J. Clement; Quinn Snell; Jared Allen; Randall J. Roper (Bioinform., 2010)

The GNUMAP algorithm: unbiased probabilistic mapping of oligonucleotides from next-generation sequencing. - Nathan L. Clement; Quinn Snell; Mark J. Clement; Peter C. Hollenhorst; Jahnvi Purwar; Barbara J. Graves; Bradley R. Cairns; W. Evan Johnson (Bioinform., 2010)

Parallel Mapping Approaches for GNUMAP. - Nathan L. Clement; Mark J. Clement; Quinn Snell; W. Evan Johnson (IPDPS Workshops, 2011)

Large-Scale Lattice Gas Monte Carlo Simulations for the Generalized Ising Model. - Tobias C. Kerscher; Stefan Müller; Quinn O. Snell; Gus L. W. Hart (IPDPS, 2011)

Accelerated large-scale multiple sequence alignment. - Scott Lloyd; Quinn O. Snell (BMC Bioinform., 2011)

HiCOMB Introduction. - Mark J. Clement; Quinn Snell; Srinivas Aluru; David A. Bader (IPDPS Workshops, 2012)

Parallel Pair-HMM SNP Detection. - Nathan L. Clement; Brent A. Shepherd; Paul M. Bodily; Sukhbat Tumur-Ochir; Younghoon Gim; Quinn Snell; Mark J. Clement; W. Evan Johnson (IPDPS Workshops, 2012)

Phylogenetic search through partial tree mixing. - Kenneth Sundberg; Mark J. Clement; Quinn Snell; Dan Ventura; Michael Whiting; Keith A. Crandall (BMC Bioinform., 2012)

Application of a MAX-CUT Heuristic to the Contig Orientation Problem in Genome Assembly. - Paul M. Bodily; Mark J. Clement; Quinn Snell; Jared C. Price; Stanley Fujimoto; Nozomu Okuda (BCB, 2013)

Identification and correction of substitution errors in Moleculo long reads. - Jared C. Price; Judson Ward; Joshua Udall; Quinn Snell; Mark J. Clement (BIBE, 2013)

Feature identification and reduction for improved generalization accuracy in secondary-structure prediction. - Matt Seeley; Mark J. Clement; Quinn Snell (BIBE, 2013)

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data. - Changjin Hong; Nathan L. Clement; Spencer Clement; Saher Sue Hammoud; Douglas T. Carrell; Bradley R. Cairns; Quinn Snell; Mark J. Clement; William Evan Johnson (BMC Bioinform., 2013)

Probabilistic inference and ranking of gene regulatory pathways as a shortest-path problem. - James D. Jensen; Daniel M. Jensen; Mark J. Clement; Quinn O. Snell (BMC Bioinform., 2013)

Haplotype-centered mapping for improved alignments and genetic association studies. - Paul M. Bodily; Mark J. Clement; Quinn Snell; M. Stanley Fujimoto; Perry G. Ridge (BCB, 2014)

A structured approach to ensemble learning for Alzheimer's disease prediction. - Matthew Seeley; Mark J. Clement; Christophe G. Giraud-Carrier; Quinn Snell; Paul M. Bodily; Stanley Fujimoto (BCB, 2014)

Effects of error-correction of heterozygous next-generation sequencing data. - M. Stanley Fujimoto; Paul M. Bodily; Nozomu Okuda; Mark J. Clement; Quinn Snell (BMC Bioinform., 2014)

Heterozygous genome assembly via binary classification of homologous sequence. - Paul M. Bodily; M. Stanley Fujimoto; Cameron Ortega; Nozomu Okuda; Jared C. Price; Mark J. Clement; Quinn Snell (BMC Bioinform., 2015)

ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction. - Paul M. Bodily; M. Stanley Fujimoto; Quinn Snell; Dan Ventura; Mark J. Clement (Bioinform., 2016)

Modeling Global and local Codon Bias with Deep Language Models. - Masaki Stanley Fujimoto; Paul M. Bodily; Cole A. Lyman; Andrew J. Jacobsen; Quinn Snell; Mark J. Clement (BIBE, 2017)

Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction. - M. Stanley Fujimoto; Cole A. Lyman; Anton Suvorov; Paul M. Bodily; Quinn Snell; Keith A. Crandall; Seth M. Bybee; Mark J. Clement (BIBE, 2017)

Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs. - Cole A. Lyman; M. Stanley Fujimoto; Anton Suvorov; Paul M. Bodily; Quinn Snell; Keith A. Crandall; Seth M. Bybee; Mark J. Clement (BIBE, 2017)

The OGCleaner: filtering false-positive homology clusters. - M. Stanley Fujimoto; Anton Suvorov; Nicholas O. Jensen; Mark J. Clement; Quinn Snell; Seth M. Bybee (Bioinform., 2017)

Compiler Optimization of Accelerator Data Transfers. - Matthew B. Ashcraft; Alexander Lemon; David A. Penry; Quinn Snell (Int. J. Parallel Program., 2019)

You Don't Have Time to Read This: An Exploration of Document Reading Time Prediction. - Orion Weller; Jordan Hildebrandt; Ilya Reznik; Christopher Challis; E. Shannon Tass; Quinn Snell; Kevin D. Seppi (ACL, 2020)

Efficient Team Formation in Social Networks based on Constrained Pattern Graph. - Yue Kou; Derong Shen; Quinn Snell; Dong Li 023; Tiezheng Nie; Ge Yu 001; Shuai Ma 001 (ICDE, 2020)