CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data. - Qunyuan Zhang; Li Ding; David E. Larson; Daniel C. Koboldt; Michael D. McLellan; Ken Chen 001; Xiaoqi Shi; Aldi T. Kraja; Elaine R. Mardis; Richard K. Wilson; Ingrid B. Borecki; Michael A. Province (Bioinform., 2010)

MSIsensor: microsatellite instability detection using paired tumor-normal sequence data. - Beifang Niu; Kai Ye 001; Qunyuan Zhang; Charles Lu 002; Mingchao Xie; Michael D. McLellan; Michael C. Wendl; Li Ding (Bioinform., 2014)

Selection of models for the analysis of risk-factor trees: leveraging biological knowledge to mine large sets of risk factors with application to microbiome data. - Qunyuan Zhang; Haley Abel; Alan Wells; Petra Lenzini; Felicia Gomez; Michael A. Province; Alan A. Templeton; George M. Weinstock; Nita H. Salzman; Ingrid B. Borecki (Bioinform., 2015)