Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. - Julien Dauguet; Davi Bock; R. Clay Reid; Simon K. Warfield (MICCAI (2), 2007)

Discovering the wiring diagram of the brain. - Jeff W. Lichtman; R. Clay Reid; Hanspeter Pfister; Michael F. Cohen (The Fourth Paradigm, 2009)

Improved Registration for Large Electron Microscopy Images. - Ayelet Akselrod-Ballin; Davi Bock; R. Clay Reid; Simon K. Warfield (ISBI, 2009)

Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma. - Ayelet Akselrod-Ballin; Davi Bock; R. Clay Reid; Simon K. Warfield (MICCAI (1), 2009)

Simulations of Electrode Placement for a Thalamic Visual Prosthesis. - John S. Pezaris; R. Clay Reid (IEEE Trans. Biomed. Eng., 2009)

Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets. - Won-Ki Jeong; Johanna Beyer; Markus Hadwiger; Rusty Blue; Charles Law; Amelio Vázquez Reina; R. Clay Reid; Jeff Lichtman; Hanspeter Pfister (IEEE Computer Graphics and Applications, 2010)

Interactive Histology of Large-Scale Biomedical Image Stacks. - Won-Ki Jeong; Jens Schneider 002; Stephen G. Turney; Beverly E. Faulkner-Jones; Dominik Meyer; Rüdiger Westermann; R. Clay Reid; Jeff Lichtman; Hanspeter Pfister (IEEE Trans. Vis. Comput. Graph., 2010)

Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy. - Ayelet Akselrod-Ballin; Davi Bock; R. Clay Reid; Simon K. Warfield (IEEE Trans. Medical Imaging, 2011)

A Multiscale Parallel Computing Architecture for Automated Segmentation of the Brain Connectome. - Sylvain Jaume; Kathleen Knobe; Ryan Newton; Frank Schlimbach; Melanie Blower; R. Clay Reid (IEEE Trans. Biomed. Eng., 2012)

The open connectome project data cluster: scalable analysis and vision for high-throughput neuroscience. - Randal C. Burns; Kunal Lillaney; Daniel R. Berger; Logan Grosenick; Karl Deisseroth; R. Clay Reid; William R. Gray Roncal; Priya Manavalan; Davi Bock; Narayanan Kasthuri; Michael M. Kazhdan; Stephen J. Smith; et al. (SSDBM, 2013)

Visual physiology of the layer 4 cortical circuit in silico. - Anton Arkhipov; Nathan W. Gouwens; Yazan N. Billeh; Sergey L. Gratiy; Ramakrishnan Iyer; Ziqiang Wei; Zihao Xu; Reza Abbasi-Asl; Jim Berg; Michael A. Buice; Nicholas Cain; Nuno daCosta; et al. (PLoS Comput. Biol., 2018)

Automated Neuron Shape Analysis from Electron Microscopy. - Sharmishtaa Seshamani; Leila Elabbady; Casey Schneider-Mizell; Gayathri Mahalingam; Sven Dorkenwald; Agnes Bodor; Thomas Macrina; Daniel Bumbarger; JoAnn Buchanan; Marc Takeno; Wenjing Yin; Derrick Brittain; et al. (CoRR, 2020)

Autoencoder networks extract latent variables and encode these variables in their connectomes. - Matthew Farrell; Stefano Recanatesi; R. Clay Reid; Stefan Mihalas; Eric Shea-Brown (Neural Networks, 2021)

Anomaly Detection in EM Images - A Zero-Shot Learning Approach. - Gayathri Mahalingam; Tong Jiao; Casey Schneider-Mizell; Agnes Bodor; Russel Torres; Marc Takeno; JoAnn Buchanan; Daniel Bumbarger; Wenjing Yin; Derrick Brittain; R. Clay Reid; Nuno daCosta (ISBI, 2022)