Improved Estimation and Interpretation of Correlations in Neural Circuits. - Dimitri Yatsenko; Kresimir Josic; Alexander S. Ecker; Emmanouil Froudarakis; R. James Cotton; Andreas S. Tolias (PLoS Comput. Biol., 2015)

Wearable Monitoring of Joint Angle and Muscle Activity. - R. James Cotton; John Rogers (ICORR, 2019)

Smartphone Control for People with Tetraplegia by Decoding Wearable Electromyography with an On-Device Convolutional Neural Network. - R. James Cotton (BioRob, 2020)

Kinematic Tracking of Rehabilitation Patients With Markerless Pose Estimation Fused with Wearable Inertial Sensors. - R. James Cotton (FG, 2020)

Factorized Neural Processes for Neural Processes: K-Shot Prediction of Neural Responses. - R. James Cotton; Fabian H. Sinz; Andreas S. Tolias (NeurIPS, 2020)

Transforming Gait: Video-Based Spatiotemporal Gait Analysis. - R. James Cotton; Emoonah McClerklin; Anthony Cimorelli; Ankit Patel; Tasos Karakostas (EMBC, 2022)

PosePipe: Open-Source Human Pose Estimation Pipeline for Clinical Research. - R. James Cotton (CoRR, 2022)

Multi-hypothesis 3D human pose estimation metrics favor miscalibrated distributions. - Pawel A. Pierzchlewicz; R. James Cotton; Mohammad Bashiri; Fabian H. Sinz (CoRR, 2022)

Improved Trajectory Reconstruction for Markerless Pose Estimation. - R. James Cotton; Anthony Cimorelli; Kunal Shah; Shawana Anarwala; Scott D. Uhlrich; Tasos Karakostas (EMBC, 2023)

Optimizing MPJPE promotes miscalibration in multi-hypothesis human pose lifting. - Pawel A. Pierzchlewicz; Mohammad Bashiri; R. James Cotton; Fabian H. Sinz (Tiny Papers @ ICLR, 2023)

Optimizing Trajectories and Inverse Kinematics for Biomechanical Analysis of Markerless Motion Capture Data. - R. James Cotton; Allison DeLillo; Anthony Cimorelli; Kunal Shah; J. D. Peiffer; Shawana Anarwala; Kayan Abdou; Tasos Karakostas (ICORR, 2023)

Self-Supervised Learning of Gait-Based Biomarkers. - R. James Cotton; J. D. Peiffer; Kunal Shah; Allison DeLillo; Anthony Cimorelli; Shawana Anarwala; Kayan Abdou; Tasos Karakostas (PRIME@MICCAI, 2023)

A Wireless, Mechanically Flexible, 25μm-Thick, 65, 536-Channel Subdural Surface Recording and Stimulating Microelectrode Array with Integrated Antennas. - Nanyu Zeng; Taesung Jung; Mohit Sharma; Guy Eichler; Jason D. Fabbri; R. James Cotton; Eleonora Spinazzi; Brett Youngerman; Luca P. Carloni; Kenneth L. Shepard (VLSI Technology and Circuits, 2023)

Markerless Motion Capture and Biomechanical Analysis Pipeline. - R. James Cotton; Allison DeLillo; Anthony Cimorelli; Kunal Shah; J. D. Peiffer; Shawana Anarwala; Kayan Abdou; Tasos Karakostas (CoRR, 2023)

Dynamic Gaussian Splatting from Markerless Motion Capture can Reconstruct Infants Movements. - R. James Cotton; Colleen Peyton (CoRR, 2023)

Biomechanical Arm and Hand Tracking with Multiview Markerless Motion Capture. - Pouyan Firouzabadi; Wendy Murray; Anton R. Sobinov; J. D. Peiffer; Kunal Shah; Lee E. Miller; R. James Cotton (BioRob, 2024)

Fusing Uncalibrated IMUs and Handheld Smartphone Video to Reconstruct Knee Kinematics. - J. D. Peiffer; Kunal Shah; Shawana Anarwala; Kayan Abdou; R. James Cotton (BioRob, 2024)

Advancing Monocular Video-Based Gait Analysis Using Motion Imitation with Physics-Based Simulation. - Nikolaos Smyrnakis; Tasos Karakostas; R. James Cotton (BioRob, 2024)

Dynamic Gaussian Splatting from Markerless Motion Capture Reconstruct Infants Movements. - R. James Cotton; Colleen Peyton (WACV (Workshops), 2024)

Generalization properties of contrastive world models. - Kandan Ramakrishnan; R. James Cotton; Xaq Pitkow; Andreas S. Tolias (CoRR, 2024)

Platypose: Calibrated Zero-Shot Multi-Hypothesis 3D Human Motion Estimation. - Pawel A. Pierzchlewicz; Caio da Silva; R. James Cotton; Fabian H. Sinz (CoRR, 2024)

A Causal Framework for Precision Rehabilitation. - R. James Cotton; Bryant A. Seamon; Richard L. Segal; Randal D. Davis; Amrita Sahu; Michelle M. McLeod; Pablo Celnik; Sharon L. Ramey (CoRR, 2024)

Differentiable Biomechanics for Markerless Motion Capture in Upper Limb Stroke Rehabilitation: A Comparison with Optical Motion Capture. - Tim Unger; Arash Sal Moslehian; J. D. Peiffer; Johann Ullrich; Roger Gassert; Olivier Lambercy; R. James Cotton; Chris Awai Easthope (CoRR, 2024)

Differentiable Biomechanics Unlocks Opportunities for Markerless Motion Capture. - R. James Cotton (ICORR, 2025)

Biomechanical Reconstruction with Confidence Intervals from Multiview Markerless Motion Capture. - R. James Cotton; Fabian H. Sinz (CoRR, 2025)

KinTwin: Imitation Learning with Torque and Muscle Driven Biomechanical Models Enables Precise Replication of Able-Bodied and Impaired Movement from Markerless Motion Capture. - R. James Cotton (CoRR, 2025)

BiomechGPT: Towards a Biomechanically Fluent Multimodal Foundation Model for Clinically Relevant Motion Tasks. - Ruize Yang; Ann Kennedy; R. James Cotton (CoRR, 2025)

Similarity as Reward Alignment: Robust and Versatile Preference-based Reinforcement Learning. - Sara Rajaram; R. James Cotton; Fabian H. Sinz (CoRR, 2025)

Portable Biomechanics Laboratory: Clinically Accessible Movement Analysis from a Handheld Smartphone. - J. D. Peiffer; Kunal Shah; Irina Djuraskovic; Shawana Anarwala; Kayan Abdou; Rujvee Patel; Prakash Jayabalan; Brenton Pennicooke; R. James Cotton (CoRR, 2025)