CNAseg - a novel framework for identification of copy number changes in cancer from second-generation sequencing data. - Sergii Ivakhno; Tom Royce; Anthony J. Cox; Dirk J. Evers; R. Keira Cheetham; Simon Tavaré (Bioinform., 2010)

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. - Christopher T. Saunders; Wendy S. W. Wong; Sajani Swamy; Jennifer Becq; Lisa J. Murray; R. Keira Cheetham (Bioinform., 2012)