Global pairwise sequence alignment through mixed-integer linear programming: a template-free approach. - Scott R. McAllister; R. Rajgaria; Christodoulos A. Floudas (Optim. Methods Softw., 2007)

Global Pairwise Protein Sequence Alignment via Mixed-Integer Linear Optimization. - Scott R. McAllister; R. Rajgaria; Christodoulos A. Floudas (Encyclopedia of Optimization, 2009)

Distance Dependent Protein Force Field via Linear Optimization. - R. Rajgaria; Scott R. McAllister; Christodoulos A. Floudas (Encyclopedia of Optimization, 2009)