Biological Sequences Encoding for Supervised Classification. - Rabie Saidi; Mondher Maddouri; Engelbert Mephu Nguifo (BIRD, 2007)

Classification supervisée de séquences biologiques basée sur les motifs et les matrices de substitution. - Rabie Saidi; Mondher Maddouri; Engelbert Mephu Nguifo (EGC, 2007)

Comparing graph-based representations of protein for mining purposes. - Rabie Saidi; Mondher Maddouri; Engelbert Mephu Nguifo (KDD Workshop on Statistical and Relational Learning in Bioinformatics, 2009)

Protein graph repository. - Wajdi Dhifli; Rabie Saidi (EGC, 2010)

Etude de stabilité de méthodes d'extraction de motifs à partir des séquences protéiques. - Rabie Saidi; Sabeur Aridhi; Mondher Maddouri; Engelbert Mephu Nguifo (EGC, 2010)

Protein sequences classification by means of feature extraction with substitution matrices. - Rabie Saidi; Mondher Maddouri; Engelbert Mephu Nguifo (BMC Bioinform., 2010)

A novel approach for mining representative spatial motifs of proteins. - Wajdi Dhifli; Rabie Saidi; Engelbert Mephu Nguifo (BCB, 2012)

Feature extraction in protein sequences classification: a new stability measure. - Rabie Saidi; Sabeur Aridhi; Engelbert Mephu Nguifo; Mondher Maddouri (BCB, 2012)

Ranking and Selecting Association Rules Based on Dominance Relationship. - Slim Bouker; Rabie Saidi; Sadok Ben Yahia; Engelbert Mephu Nguifo (ICTAI, 2012)

Motif extraction from complex data: case of protein classification. (Extraction de motifs des données complexes: cas de la classification des protéines). - Rabie Saidi (2012)

Towards an Efficient Discovery of the Topological Representative Subgraphs. - Wajdi Dhifli; Mohamed Moussaoui; Rabie Saidi; Engelbert Mephu Nguifo (CoRR, 2013)

Mining Representative Unsubstituted Graph Patterns Using Prior Similarity Matrix - Wajdi Dhifli; Rabie Saidi; Engelbert Mephu Nguifo (CoRR, 2013)

Towards a semantic and statistical selection of association rules - Slim Bouker; Rabie Saidi; Sadok Ben Yahia; Engelbert Mephu Nguifo (CoRR, 2013)

Mining Undominated Association Rules Through Interestingness Measures. - Slim Bouker; Rabie Saidi; Sadok Ben Yahia; Engelbert Mephu Nguifo (Int. J. Artif. Intell. Tools, 2014)

Smoothing 3D Protein Structure Motifs Through Graph Mining and Amino Acid Similarities. - Wajdi Dhifli; Rabie Saidi; Engelbert Mephu Nguifo (J. Comput. Biol., 2014)

UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB. - Tunca Dogan; Alistair MacDougall; Rabie Saidi; Diego Poggioli; Alex Bateman; Claire O'Donovan; Maria Jesus Martin (Bioinform., 2016)

Tools and data services registry: a community effort to document bioinformatics resources. - Jon C. Ison; Kristoffer Rapacki; Hervé Ménager; Matús Kalas; Emil Rydza; Piotr Chmura; Christian Anthon; Niall Beard; Karel Berka; Dan M. Bolser; Tim Booth; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2016)

Efficiently Mining Recurrent Substructures from Protein Three-Dimensional Structure Graphs. - Rabie Saidi; Wajdi Dhifli; Mondher Maddouri; Engelbert Mephu Nguifo (J. Comput. Biol., 2019)

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. - Alistair MacDougall; Vladimir Volynkin; Rabie Saidi; Diego Poggioli; Hermann Zellner; Emma Hatton-Ellis; Vishal Joshi; Claire O'Donovan; Sandra E. Orchard; Andrea H. Auchincloss; Delphine Baratin; Jerven T. Bolleman; et al. (Bioinform., 2021)

UniProt: the universal protein knowledgebase in 2021. - Alex Bateman; Maria Jesus Martin; Sandra E. Orchard; Michele Magrane; Rahat Agivetova; Shadab Ahmad; Emanuele Alpi; Emily H. Bowler-Barnett; Ramona Britto; Borisas Bursteinas; Hema Bye-A-Jee; Ray Coetzee; et al. (Nucleic Acids Res., 2021)

Hierarchical deep learning for predicting GO annotations by integrating protein knowledge. - Gabriela Alejandra Merino; Rabie Saidi; Diego H. Milone; Georgina Stegmayer; Maria Jesus Martin (Bioinform., 2022)

Annotation of biologically relevant ligands in UniProtKB using ChEBI. - Elisabeth Coudert; Sebastien Gehant; Edouard De Castro; Monica Pozzato; Delphine Baratin; Teresa Batista Neto; Christian J. A. Sigrist; Nicole Redaschi; Alan J. Bridge; Lucila Aimo; Ghislaine Argoud-Puy; Andrea H. Auchincloss; et al. (Bioinform., 2023)