Functional Trends in Structural Classes of the DNA Binding Domains of Regulatory Transcription Factors. - Rachel Patton McCord; Martha L. Bulyk (Pacific Symposium on Biocomputing, 2008)

Inferring chromosome radial organization from Hi-C data. - Priyojit Das; Tongye Shen; Rachel Patton McCord (BMC Bioinform., 2020)

CoSTA: unsupervised convolutional neural network learning for spatial transcriptomics analysis. - Yang Xu 047; Rachel Patton McCord (BMC Bioinform., 2021)

SMILE: mutual information learning for integration of single-cell omics data. - Yang Xu 047; Priyojit Das; Rachel Patton McCord (Bioinform., 2022)

Characterizing the variation in chromosome structure ensembles in the context of the nuclear microenvironment. - Priyojit Das; Tongye Shen; Rachel Patton McCord (PLoS Comput. Biol., 2022)