GOLEM: an interactive graph-based gene-ontology navigation and analysis tool. - Rachel S. G. Sealfon; Matthew A. Hibbs; Curtis Huttenhower; Chad L. Myers; Olga G. Troyanskaya (BMC Bioinform., 2006)

Scalable, Dynamic Analysis and Visualization for Genomic Datasets. - Grant Wallace; Matthew A. Hibbs; Maitreya J. Dunham; Rachel S. G. Sealfon; Olga G. Troyanskaya; Kai Li 001 (IPDPS, 2007)

Computational investigation of pathogen evolution. - Rachel S. G. Sealfon (2015)

Virus genomes reveal factors that spread and sustained the Ebola epidemic. - Gytis Dudas; Luiz Max Carvalho; Trevor Bedford; Andrew J. Tatem; Guy Baele; Nuno R. Faria; Daniel J. Park; Jason T. Ladner; Armando Arias; Danny Asogun; Filip Bielejec; Sarah L. Caddy; et al. (Nat., 2017)