Nonlinear nonsquare control of a continuous bioreactor using flat outputs. - Radhakrishnan Mahadevan; Francis J. Doyle (ECC, 1999)

A partial flatness approach to nonlinear moving horizon estimation. - Radhakrishnan Mahadevan; Francis J. Doyle (ACC, 2004)

Batch control of genetic alterations for optimal metabolic engineering. - Kapil G. Gadkar; Radhakrishnan Mahadevan; Francis J. Doyle III (ACC, 2005)

Optimal genetic manipulations in batch bioreactor control. - Kapil G. Gadkar; Radhakrishnan Mahadevan; Francis J. Doyle III (Autom., 2006)

Genome Regions Involved in Multiple Regulatory Pathways Identified Using GSEL, A Genome-Wide Database of Regulatory Sequence Elements of Geobacter sulfurreducens. - Julia Krushkal; Marko Puljic; Bin Yan; Jose F. Barbe; Radhakrishnan Mahadevan; Bradley Postier; Regina A. O'Neil; Gemma Reguera; Ching Leang; Laurie N. DiDonato; Cinthia Núñez; Barbara A. Methé; et al. (BMEI (1), 2008)

A bilevel optimization algorithm to identify enzymatic capacity constraints in metabolic networks. - Laurence Yang 001; Radhakrishnan Mahadevan; William R. Cluett (Comput. Chem. Eng., 2008)

Computational and Experimental Analysis of Redundancy in the Central Metabolism of Geobacter sulfurreducens. - Daniel Segura; Radhakrishnan Mahadevan; Katy Juarez; Derek R. Lovley (PLoS Comput. Biol., 2008)

Genome-scale constraint-based modeling of Geobacter metallireducens. - Jun Sun; Bahareh Sayyar; Jessica E. Butler; Priti Pharkya; Tom Fahland; Iman Famili; Christophe H. Schilling; Derek R. Lovley; Radhakrishnan Mahadevan (BMC Syst. Biol., 2009)

Designing experiments from noisy metabolomics data to refine constraint-based models. - Laurence Yang 001; Radhakrishnan Mahadevan; William R. Cluett (ACC, 2010)

Characterizing the Metabolism of Dehalococcoides with a Constraint-Based Model. - M. Ahsanul Islam; Elizabeth A. Edwards; Radhakrishnan Mahadevan (PLoS Comput. Biol., 2010)

Genome-scale strain designs based on regulatory minimal cut sets. - Radhakrishnan Mahadevan; Axel von Kamp; Steffen Klamt (Bioinform., 2015)

From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints. - Steffen Klamt; Georg Regensburger; Matthias P. Gerstl; Christian Jungreuthmayer; Stefan Schuster; Radhakrishnan Mahadevan; Jürgen Zanghellini; Stefan Müller 009 (PLoS Comput. Biol., 2017)

Model-based design of bistable cell factories for metabolic engineering. - Shyam Srinivasan; William R. Cluett; Radhakrishnan Mahadevan (Bioinform., 2018)

AYbRAH: a curated ortholog database for yeasts and fungi spanning 600 million years of evolution. - Kevin Correia; Shi M. Yu; Radhakrishnan Mahadevan (Database J. Biol. Databases Curation, 2019)

A scalable method for parameter identification in kinetic models of metabolism using steady-state data. - Shyam Srinivasan; William R. Cluett; Radhakrishnan Mahadevan (Bioinform., 2019)

A multi-scale model for low-density lipoprotein cholesterol (LDL-C) regulation in the human body: Application to quantitative systems pharmacology. - Masood Khaksar Toroghi; William R. Cluett; Radhakrishnan Mahadevan (Comput. Chem. Eng., 2019)

Speeding up the core algorithm for the dual calculation of minimal cut sets in large metabolic networks. - Steffen Klamt; Radhakrishnan Mahadevan; Axel von Kamp (BMC Bioinform., 2020)

Enzyme Activity Prediction of Sequence Variants on Novel Substrates using Improved Substrate Encodings and Convolutional Pooling. - Zhiqing Xu; Jinghao Wu; Yun S. Song; Radhakrishnan Mahadevan (MLBC, 2021)

Physiologically-based pharmacokinetic model for predicting blood and tissue tetrahydrocannabinol concentrations. - Leo Zhu; William Pei; Patricia DiCiano; Bruna Brands; Christine M. Wickens; Bernard Le Foll; Bronsen Kwong; Megha Parashar; Atchu Sivananthan; Radhakrishnan Mahadevan (Comput. Chem. Eng., 2021)

A gap-filling algorithm for prediction of metabolic interactions in microbial communities. - Dafni Giannari; Cleo Hanchen Ho; Radhakrishnan Mahadevan (PLoS Comput. Biol., 2021)

Integration of a physiologically-based pharmacokinetic model with a whole-body, organ-resolved genome-scale model for characterization of ethanol and acetaldehyde metabolism. - Leo Zhu; William Pei; Ines Thiele; Radhakrishnan Mahadevan (PLoS Comput. Biol., 2021)

KinMod database: a tool for investigating metabolic regulation. - Kiandokht Haddadi; Rana Ahmed Barghout; Radhakrishnan Mahadevan (Database J. Biol. Databases Curation, 2022)

Nonlinear programming reformulation of dynamic flux balance analysis models. - Rafael D. de Oliveira; Galo A. C. Le Roux; Radhakrishnan Mahadevan (Comput. Chem. Eng., 2023)