Bounded search for de novo identification of degenerate cis-regulatory elements. - Jonathan M. Carlson; Arijit Chakravarty; Radhika S. Khetani; Robert H. Gross (BMC Bioinform., 2006)

SPACER: identification of cis-regulatory elements with non-contiguous critical residues. - Arijit Chakravarty; Jonathan M. Carlson; Radhika S. Khetani; Charles E. DeZiel; Robert H. Gross (Bioinform., 2007)

A novel ensemble learning method for de novo computational identification of DNA binding sites. - Arijit Chakravarty; Jonathan M. Carlson; Radhika S. Khetani; Robert H. Gross (BMC Bioinform., 2007)

BSQA: integrated text mining using entity relation semantics extracted from biological literature of insects. - Xin He 001; Yanen Li; Radhika S. Khetani; Barry Sanders; Yue Lu 002; Xu Ling; ChengXiang Zhai; Bruce R. Schatz (Nucleic Acids Res., 2010)

BeeSpace Navigator: exploratory analysis of gene function using semantic indexing of biological literature. - Moushumi Sen Sarma; David Arcoleo; Radhika S. Khetani; Brant W. Chee; Xu Ling; Xin He 001; Jing Jiang 007; Qiaozhu Mei; ChengXiang Zhai; Bruce R. Schatz (Nucleic Acids Res., 2011)

bcbioRNASeq: R package for bcbio RNA-seq analysis. - Michael J. Steinbaugh; Lorena Pantano; Rory D. Kirchner; Víctor Barrera; Brad A. Chapman; Mary E. Piper; Meeta Mistry; Radhika S. Khetani; Kayleigh Rutherford; Oliver Hofmann 001; John N. Hutchinson; Shannan J. Ho Sui (F1000Research, 2017)

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network. - C. Victor Jongeneel; Ovokeraye Achinike-Oduaran; Ezekiel F. Adebiyi; Marion O. Adebiyi; Seun Adeyemi; Bola Akanle; Shaun Aron; Efejiro Ashano; Hocine Bendou; Gerrit Botha; Emile R. Chimusa; Ananyo Choudhury; et al. (PLoS Comput. Biol., 2017)