READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation. - Raeece Naeem; Mamoon Rashid 003; Arnab Pain (Bioinform., 2013)

SVAMP: sequence variation analysis, maps and phylogeny. - Raeece Naeem; Lailatul Hidayah; Mark D. Preston; Taane G. Clark; Arnab Pain (Bioinform., 2014)