Determining the components of the complement of a digital (n-1)-manifold in Zn. - Rafael Ayala; Eladio Domínguez; Angel R. Francés; Antonio Quintero (DGCI, 1996)

Digital Lighting Functions. - Rafael Ayala; Eladio Domínguez; Angel R. Francés; Antonio Quintero (DGCI, 1997)

A Digital Lighting Function for Strong 26-Surfaces. - Rafael Ayala; Eladio Domínguez; Angel R. Francés; Antonio Quintero (DGCI, 1999)

On the connectivity of infinite graphs and 2-complexes. - Rafael Ayala; M. J. Chávez; Alberto Márquez 001; Antonio Quintero (Discret. Math., 1999)

A Digital Index Theorem. - Eladio Domínguez; Angel R. Francés; Rafael Ayala; Antonio Quintero (Int. J. Pattern Recognit. Artif. Intell., 2001)

Weak lighting functions and strong 26-surfaces. - Rafael Ayala; Eladio Domínguez; Angel R. Francés; Antonio Quintero (Theor. Comput. Sci., 2002)

Homotopy in digital spaces. - Rafael Ayala; Eladio Domínguez; Angel R. Francés; Antonio Quintero (Discret. Appl. Math., 2003)

Digital homotopy with obstacles. - Rafael Ayala; Eladio Domínguez; Angel R. Francés; Antonio Quintero (Discret. Appl. Math., 2004)

Discrete Morse Inequalities on Infinite Graphs. - Rafael Ayala; Luis M. Fernández; José Antonio Vilches (Electron. J. Comb., 2009)

The number of excellent discrete Morse functions on graphs. - Rafael Ayala; Desamparados Fernández-Ternero; José Antonio Vilches (Discret. Appl. Math., 2011)

A graph-theoretical approach to cancelling critical elements. - Rafael Ayala; Desamparados Fernández-Ternero; José Antonio Vilches (Electron. Notes Discret. Math., 2011)

Perfect Discrete Morse Functions on Triangulated 3-Manifolds. - Rafael Ayala; Desamparados Fernández-Ternero; José Antonio Vilches (CTIC, 2012)

Perfect discrete Morse functions on 2-complexes. - Rafael Ayala; Desamparados Fernández-Ternero; José Antonio Vilches (Pattern Recognit. Lett., 2012)

MetaboSignal: a network-based approach for topological analysis of metabotype regulation via metabolic and signaling pathways. - Andrea Rodriguez-Martinez; Rafael Ayala; Joram M. Posma; Ana Luísa Neves; Dominique Gauguier; Jeremy K. Nicholson; Marc-Emmanuel Dumas (Bioinform., 2017)

MWASTools: an R/bioconductor package for metabolome-wide association studies. - Andrea Rodriguez-Martinez; Joram M. Posma; Rafael Ayala; Ana Luísa Neves; Maryam Anwar; Enrico Petretto; Costanza Emanueli; Dominique Gauguier; Jeremy K. Nicholson; Marc-Emmanuel Dumas (Bioinform., 2018)

pJRES Binning Algorithm (JBA): a new method to facilitate the recovery of metabolic information from pJRES 1H NMR spectra. - Andrea Rodriguez-Martinez; Rafael Ayala; Joram M. Posma; Nikita Harvey; Beatriz Jiménez; Kazuhiro Sonomura; Taka-Aki Sato; Fumihiko Matsuda; Pierre A. Zalloua; Dominique Gauguier; Jeremy K. Nicholson; Marc-Emmanuel Dumas (Bioinform., 2019)

openSkies - Integration of Aviation Data into the R Ecosystem. - Rafael Ayala; Daniel Ayala 001; Lara Sellés Vidal; David Ruiz 001 (R J., 2021)

PyMedPhys: A community effort to develop an open, Python-based standard library for medical physics applications. - Simon Biggs; Matthew Jennings; Stuart Swerdloff; Phillip Chlap; Derek Lane; Jacob Rembish; Jacob McAloney; Paul King; Rafael Ayala; Fada Guan; Nicola Lambri; Cody Crewson; et al. (J. Open Source Softw., 2022)

Neural Networks for Aircraft Trajectory Prediction: Answering Open Questions About Their Performance. - Daniel Ayala 001; Rafael Ayala; Lara Sellés Vidal; Inma Hernández; David Ruiz 001 (IEEE Access, 2023)

asteRisk - Integration and Analysis of Satellite Positional Data in R. - Rafael Ayala; Daniel Ayala 001; Lara Sellés Vidal; David Ruiz 001 (R J., 2023)

AYNEXT - tools for streamlining the evaluation of link prediction techniques. - Fernando Sola; Daniel Ayala 001; Rafael Ayala; Inma Hernández; Carlos R. Rivero; David Ruiz 001 (SoftwareX, 2023)

Refining satellite trajectories with celestial body features using neural networks. - José Calderón; Daniel Ayala 001; Rafael Ayala; Luis Valencia-Cabrera; Inma Hernández; David Ruiz 001 (Expert Syst. Appl., 2025)

Gintegrator: Enhancing biological sequences data integration with real-time identifier translation. - Fernando Sola; Daniel Ayala 001; Marina Pulido; Rafael Ayala; Lorena López-Cerero; Inma Hernández; David Ruiz 001 (SoftwareX, 2025)

Corrigendum to "Gintegrator: Enhancing biological sequences data integration with real-time identifier translation" [SoftwareX, Volume 29 (2025), 102041]. - Fernando Sola; Daniel Ayala 001; Marina Pulido; Rafael Ayala; Lorena López-Cerero; Inma Hernández; David Ruiz 001 (SoftwareX, 2025)