Quantitative computer simulations of biomolecules: A snapshot. - Wei Yang; Hugh Nymeyer; Huan-Xiang Zhou; Bernd A. Berg; Rafael Brüschweiler (J. Comput. Chem., 2007)

In Silico Elucidation of the Recognition Dynamics of Ubiquitin. - Dong Long; Rafael Brüschweiler (PLoS Comput. Biol., 2011)

Statistical database analysis of the role of loop dynamics for protein-protein complex formation and allostery. - Yina Gu; Da-Wei Li; Rafael Brüschweiler (Bioinform., 2017)

Molecular dynamics simulations of intrinsically disordered proteins p53TAD and Pup. - Lei Yu; Rafael Brüschweiler (Zenodo, 2022)

Quantitative prediction of ensemble dynamics, shapes and contact propensities of intrinsically disordered proteins. - Lei Yu; Rafael Brüschweiler (PLoS Comput. Biol., 2022)

Comparative Analysis of Polarizable and Nonpolarizable CHARMM Family Force Fields for Proteins with Flexible Loops and High Charge Density. - Sangram Prusty; Rafael Brüschweiler; Qiang Cui 003 (J. Chem. Inf. Model., 2025)