Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures. - José Renato M. S. Barroso; Diego C. B. Mariano; Sandro R. Dias; Rafael E. O. Rocha; Lucianna Helene Santos; Ronaldo Alves Pinto Nagem; Raquel Cardoso de Melo Minardi (BMC Bioinform., 2020)

Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm. - Pedro M. Martins 001; Lucianna Helene Santos; Diego C. B. Mariano; Felippe C. Queiroz; Luana L. Bastos; Isabela de Souza Gomes; Pedro H. C. Fischer; Rafael E. O. Rocha; Sabrina de Azevedo Silveira; Leonardo H. F. de Lima; Mariana T. Q. de Magalhães; Maria G. A. Oliveira; et al. (BMC Bioinform., 2021)

Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease Mpro and Papain-like Protease PLpro of SARS-CoV-2. - Lucianna Helene Santos; Thales Kronenberger; Renata G. Almeida; Elany B. Silva; Rafael E. O. Rocha; Joyce C. Oliveira; Luiza V. Barreto; Danielle Skinner; Pavla Fajtová; Miriam A. Giardini; Brendon Woodworth; Conner Bardine; et al. (J. Chem. Inf. Model., 2022)