STATegra EMS: an Experiment Management System for complex next-generation omics experiments. - Rafael Hernández-de-Diego; Noemi Boix-Chova; David Gomez-Cabrero; Jesper Tegnér; Imad Abugessaisa; Ana Conesa (BMC Syst. Biol., 2014)

The eBioKit, a stand-alone educational platform for bioinformatics. - Rafael Hernández-de-Diego; Etienne Pierre de Villiers; Tomas Klingström; Hadrien Gourlé; Ana Conesa; Erik Bongcam-Rudloff (PLoS Comput. Biol., 2017)

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data. - Rafael Hernández-de-Diego; Sonia Tarazona; Carlos Martínez-Mira; Leandro Balzano-Nogueira; Pedro Furió-Tarí; Georgios Joannis Pappas Jr.; Ana Conesa (Nucleic Acids Res., 2018)