Analysing the evolution of the NCI Thesaurus. - Rafael S. Gonçalves 001; Bijan Parsia; Ulrike Sattler (CBMS, 2011)

Categorising logical differences between OWL ontologies. - Rafael S. Gonçalves 001; Bijan Parsia; Ulrike Sattler (CIKM, 2011)

Analysing Multiple Versions of an Ontology: A Study of the NCI Thesaurus. - Rafael S. Gonçalves 001; Bijan Parsia; Ulrike Sattler (Description Logics, 2011)

Ecco: A Hybrid Diff Tool for OWL 2 ontologies. - Rafael S. Gonçalves 001; Bijan Parsia; Ulrike Sattler (OWLED, 2012)

FishMark: A Linked Data Application Benchmark. - Samantha Bail; Sandra Alkiviadous; Bijan Parsia; David Workman; Mark van Harmelen; Rafael S. Gonçalves 001; Cristina Garilao (SSWS+HPCSW@ISWC, 2012)

Performance Heterogeneity and Approximate Reasoning in Description Logic Ontologies. - Rafael S. Gonçalves 001; Bijan Parsia; Ulrike Sattler (ISWC (1), 2012)

Concept-Based Semantic Difference in Expressive Description Logics. - Rafael S. Gonçalves 001; Bijan Parsia; Ulrike Sattler (ISWC (1), 2012)

Finding Fault: Detecting Issues in a Versioned Ontology. - Maria Copeland; Rafael S. Gonçalves 001; Bijan Parsia; Uli Sattler; Robert Stevens 001 (ESWC (Satellite Events), 2013)

OWL Reasoner Evaluation (ORE) Workshop 2013 Results: Short Report. - Rafael S. Gonçalves 001; Samantha Bail; Ernesto Jiménez-Ruiz; Nicolas Matentzoglu; Bijan Parsia; Birte Glimm; Yevgeny Kazakov (ORE, 2013)

The Empirical Robustness of Description Logic Classification. - Rafael S. Gonçalves 001; Nicolas Matentzoglu; Bijan Parsia; Uli Sattler (ISWC (Posters & Demos), 2013)

Comparing Ontologies with ecco. - Rafael S. Gonçalves 001; Bijan Parsia; Uli Sattler (ISWC (Posters & Demos), 2013)

Impact analysis in description logic ontologies. - João Rafael Landeiro de Sousa Gonçalves (2014)

NCBO BioPortal version 4. - Ray W. Fergerson; Paul R. Alexander; Michael Dorf; Rafael S. Gonçalves 001; Manuel Salvadores; Alex Skrenchuk; Jennifer Vendetti; Mark A. Musen (ICBO, 2015)

OWL-based form generation and structured data acquisition. - Rafael S. Gonçalves 001; Csongor I. Nyulas; Samson W. Tu; Mark A. Musen (ICBO, 2015)

Structured data acquisition with ontology-based web forms. - Rafael S. Gonçalves 001; Samson W. Tu; Csongor I. Nyulas; Michael J. Tierney; Mark A. Musen (ICBO, 2015)

The OWL Reasoner Evaluation (ORE) 2015 Resources. - Bijan Parsia; Nicolas Matentzoglu; Rafael S. Gonçalves 001; Birte Glimm; Andreas Steigmiller (ISWC (2), 2016)

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments. - Rafael S. Gonçalves 001; Martin J. O'Connor; Marcos Martínez Romero; Attila L. Egyedi; Debra Willrett; John B. Graybeal; Mark A. Musen (ISWC (2), 2017)

Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies. - Rafael S. Gonçalves 001; Martin J. O'Connor; Marcos Martínez Romero; John B. Graybeal; Mark A. Musen (SemSci@ISWC, 2017)

An ontology-driven tool for structured data acquisition using Web forms. - Rafael S. Gonçalves 001; Samson W. Tu; Csongor I. Nyulas; Michael J. Tierney; Mark A. Musen (J. Biomed. Semant., 2017)

The OWL Reasoner Evaluation (ORE) 2015 Competition Report. - Bijan Parsia; Nicolas Matentzoglu; Rafael S. Gonçalves 001; Birte Glimm; Andreas Steigmiller (J. Autom. Reason., 2017)

Protégé 5.5 - Improvements for Editing Biomedical Ontologies. - Matthew Horridge; Rafael S. Gonçalves 001; Csongor I. Nyulas; Tania Tudorache; Mark A. Musen (ICBO, 2018)

Using Ontologies to Drive the Creation of High-Quality Metadata in CEDAR. - Rafael S. Gonçalves 001; Csongor I. Nyulas; Marcos Martínez Romero; Martin J. O'Connor; John B. Graybeal; Mark A. Musen (ISWC (P&D/Industry/BlueSky), 2018)

WebProtégé 3.0 - Collaborative OWL Ontology Engineering in the Cloud. - Matthew Horridge; Rafael S. Gonçalves 001; Csongor I. Nyulas; Tania Tudorache; Mark A. Musen (ISWC (P&D/Industry/BlueSky), 2018)

The Variable Quality of Metadata About Biological Samples Used in Biomedical Experiments. - Rafael S. Gonçalves 001; Mark A. Musen (CoRR, 2018)

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings. - Rafael S. Gonçalves 001; Maulik R. Kamdar; Mark A. Musen (ESWC, 2019)

Use of OWL and Semantic Web Technologies at Pinterest. - Rafael S. Gonçalves 001; Matthew Horridge; Rui Li; Yu Liu; Mark A. Musen; Csongor I. Nyulas; Evelyn Obamos; Dhananjay Shrouty; David Temple (ISWC (2), 2019)

WebProtégé: A Cloud-Based Ontology Editor. - Matthew Horridge; Rafael S. Gonçalves 001; Csongor I. Nyulas; Tania Tudorache; Mark A. Musen (WWW (Companion Volume), 2019)

A WebProtégé Plugin for Attesting to the Provenance of Ontologies on the Ethereum Blockchain. - Simon Curty; Hans-Georg Fill; Rafael S. Gonçalves 001; Mark A. Musen (ISWC (Posters/Demos/Industry), 2021)

An Architecture for Attesting to the Provenance of Ontologies Using Blockchain Technologies. - Simon Curty; Hans-Georg Fill; Rafael S. Gonçalves 001; Mark A. Musen (BMSD, 2022)

Visualising the effects of ontology changes and studying their understanding with ChImp. - Romana Pernisch; Daniele Dell'Aglio; Mirko Serbak; Rafael S. Gonçalves 001; Abraham Bernstein (J. Web Semant., 2022)

Implications of mappings between ICD clinical diagnosis codes and Human Phenotype Ontology terms. - Amelia L. M. Tan; Rafael S. Gonçalves 001; William Yuan; Gabriel A. Brat; The Consortium for Clinical Characterization of COVID-19 by EHR; Robert Gentleman; Isaac S. Kohane (CoRR, 2024)

The text2term tool to map free-text descriptions of biomedical terms to ontologies. - Rafael S. Gonçalves 001; Jason Payne; Amelia L. M. Tan; Carmen Benitez; Jamie Haddock; Robert Gentleman (Database J. Biol. Databases Curation, 2024)