ProtTest: selection of best-fit models of protein evolution. - Federico Abascal; Rafael Zardoya; David Posada (Bioinform., 2005)

GenDecoder: genetic code prediction for metazoan mitochondria. - Federico Abascal; Rafael Zardoya; David Posada (Nucleic Acids Res., 2006)

Automatic Prediction of the Genetic Code. - Mateus Patricio; Jaime Huerta-Cepas; Toni Gabaldón; Rafael Zardoya; David Posada (IWANN (2), 2009)

Accurate Selection of Models of Protein Evolution. - Mateus Patricio; Federico Abascal; Rafael Zardoya; David Posada (IWPACBB, 2010)

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations. - Federico Abascal; Rafael Zardoya; Maximilian J. Telford (Nucleic Acids Res., 2010)