Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. - Rafeef Abugharbieh; Ghassan Hamarneh; Tomas Gustavsson; Clemens Kaminski (J. Math. Imaging Vis., 2003)

Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation. - Ghassan Hamarneh; Rafeef Abugharbieh; Tim McInerney (Int. J. Shape Model., 2004)

Characterizing fMRI Activations within Regions of Interest (ROIs) Using 3D Moment Invariants. - Bernard Ng; Rafeef Abugharbieh; Xuemei Huang 002; Martin J. McKeown (CVPR Workshops, 2006)

Lossless Compression of 4D Medical Images using H.264/AVC. - Victor Sanchez; Panos Nasiopoulos; Rafeef Abugharbieh (ICASSP (2), 2006)

Automatic MRI brain tissue segmentation using a hybrid statistical and geometric model. - Albert Huang; Rafeef Abugharbieh; Roger C. Tam; Anthony Traboulsee (ISBI, 2006)

Shape vs. volume: invariant shape descriptors for 3D region of interest characterization in MRI. - Sina Tootoonian; Rafeef Abugharbieh; Xuemei Huang 002; Martin J. McKeown (ISBI, 2006)

Fully automated analysis of multi-resolution four-channel micro-array genotyping data. - Mohsen Abbaspour; Rafeef Abugharbieh; Mohua Podder; Scott J. Tebbutt (Image Processing, 2006)

Brain extraction using geodesic active contours. - Albert Huang; Rafeef Abugharbieh; Roger C. Tam; Anthony Traboulsee (Image Processing, 2006)

Characterizing Task-Related Temporal Dynamics of Spatial Activation Distributions in fMRI BOLD Signals. - Bernard Ng; Rafeef Abugharbieh; Samantha J. Palmer; Martin J. McKeown (MICCAI (1), 2007)

Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. - Kelvin Poon; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (2), 2007)

Registration of 2D to 3D joint images using phase-based mutual information. - Rupin Dalvi; Rafeef Abugharbieh; Mark Pickering; Jennie M. Scarvell; Paul N. Smith (Image Processing, 2007)

Segmentation of complex objects with non-spherical topologies from volumetric medical images using 3D livewire. - Kelvin Poon; Ghassan Hamarneh; Rafeef Abugharbieh (Image Processing, 2007)

Underdetermined Anechoic Blind Source Separation via ellq-Basis-Pursuit With q<<1. - Rayan Saab; Özgür Yilmaz; Martin J. McKeown; Rafeef Abugharbieh (IEEE Trans. Signal Process., 2007)

Image segmentation using an efficient rotationally invariant 3D region-based hidden Markov model. - Albert Huang; Rafeef Abugharbieh; Roger C. Tam (CVPR Workshops, 2008)

Efficient 4D motion compensated lossless compression of dynamic volumetric medical image data. - Victor Sanchez; Panos Nasiopoulos; Rafeef Abugharbieh (ICASSP, 2008)

Inferring functional connectivity using spatial modulation measures of fMRI signals within brain regions of interest. - Bernard Ng; Rafeef Abugharbieh; Martin J. McKeown (ISBI, 2008)

Invariant 3D spharm features for characterizing fMRI activations in ROIs while minimizing effects of intersubject anatomical variability. - Ashish Uthama; Rafeef Abugharbieh; Samantha J. Palmer; Anthony Traboulsee; Martin J. McKeown (ISBI, 2008)

Bone Segmentation and Fracture Detection in Ultrasound Using 3D Local Phase Features. - Ilker Hacihaliloglu; Rafeef Abugharbieh; Antony J. Hodgson; Robert Rohling (MICCAI (1), 2008)

Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology. - Miranda Poon; Ghassan Hamarneh; Rafeef Abugharbieh (Comput. Medical Imaging Graph., 2008)

SPHARM-Based Spatial fMRI Characterization With Intersubject Anatomical Variability Reduction. - Ashish Uthama; Rafeef Abugharbieh; Samantha J. Palmer; Anthony Traboulsee; Martin J. McKeown (IEEE J. Sel. Top. Signal Process., 2008)

Efficient Lossless Compression of 4-D Medical Images Based on the Advanced Video Coding Scheme. - Victor Sanchez; Panos Nasiopoulos; Rafeef Abugharbieh (IEEE Trans. Inf. Technol. Biomed., 2008)

3D scalable lossless compression of medical images based on global and local symmetries. - Victor Sanchez; Rafeef Abugharbieh; Panos Nasiopoulos (ICIP, 2009)

Discovering Sparse Functional Brain Networks Using Group Replicator Dynamics (GRD). - Bernard Ng; Rafeef Abugharbieh; Martin J. McKeown (IPMI, 2009)

Detecting Maximal Directional Changes in Spatial fMRI Response Using Canonical Correlation Analysis. - Bernard Ng; Rafeef Abugharbieh; Martin J. McKeown (ISBI, 2009)

Automatic Data-Driven Parameterization for Phase-Based Bone Localization in US Using Log-Gabor Filters. - Ilker Hacihaliloglu; Rafeef Abugharbieh; Antony J. Hodgson; Robert Rohling (ISVC (1), 2009)

Adaptive Contextual Energy Parameterization for Automated Image Segmentation. - Josna Rao; Ghassan Hamarneh; Rafeef Abugharbieh (ISVC (1), 2009)

A Fuzzy Region-Based Hidden Markov Model for Partial-Volume Classification in Brain MRI. - Albert Huang; Rafeef Abugharbieh; Roger C. Tam (MICCAI (1), 2009)

Functional Segmentation of fMRI Data Using Adaptive Non-negative Sparse PCA (ANSPCA). - Bernard Ng; Rafeef Abugharbieh; Martin J. McKeown (MICCAI (1), 2009)

Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation - Josna Rao; Ghassan Hamarneh; Rafeef Abugharbieh (CoRR, 2009)

A Hybrid Geometric-Statistical Deformable Model for Automated 3-D Segmentation in Brain MRI. - Albert Huang; Rafeef Abugharbieh; Roger C. Tam (IEEE Trans. Biomed. Eng., 2009)

Novel Lossless fMRI Image Compression Based on Motion Compensation and Customized Entropy Coding. - Victor Sanchez; Panos Nasiopoulos; Rafeef Abugharbieh (IEEE Trans. Inf. Technol. Biomed., 2009)

Spatial Characterization of fMRI Activation Maps Using Invariant 3-D Moment Descriptors. - Bernard Ng; Rafeef Abugharbieh; Xuemei Huang 002; Martin J. McKeown (IEEE Trans. Medical Imaging, 2009)

Symmetry-Based Scalable Lossless Compression of 3D Medical Image Data. - Victor Sanchez; Rafeef Abugharbieh; Panos Nasiopoulos (IEEE Trans. Medical Imaging, 2009)

Group MRF for fMRI activation detection. - Bernard Ng; Rafeef Abugharbieh; Ghassan Hamarneh (CVPR, 2010)

Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. - Josna Rao; Rafeef Abugharbieh; Ghassan Hamarneh (ECCV (4), 2010)

Detecting Brain Activation in fMRI Using Group Random Walker. - Bernard Ng; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (2), 2010)

Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. - Bernard Ng; Arash Vahdat; Ghassan Hamarneh; Rafeef Abugharbieh (MLMI, 2010)

Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. - Andrew Top; Ghassan Hamarneh; Rafeef Abugharbieh (MCV, 2010)

3D ultrasound volume stitching using phase symmetry and harris corner detection for orthopaedic applications. - Rupin Dalvi; Ilker Hacihaliloglu; Rafeef Abugharbieh (Image Processing, 2010)

Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. - Lisa Tang; Ghassan Hamarneh; Rafeef Abugharbieh (WBIR, 2010)

A Novel Rotationally Invariant Region-Based Hidden Markov Model for Efficient 3-D Image Segmentation. - Albert Huang; Rafeef Abugharbieh; Roger C. Tam (IEEE Trans. Image Process., 2010)

3-D Scalable Medical Image Compression With Optimized Volume of Interest Coding. - Victor Sanchez; Rafeef Abugharbieh; Panos Nasiopoulos (IEEE Trans. Medical Imaging, 2010)

Generalized group sparse classifiers with application in fMRI brain decoding. - Bernard Ng; Rafeef Abugharbieh (CVPR, 2011)

Generalized Sparse Regularization with Application to fMRI Brain Decoding. - Bernard Ng; Rafeef Abugharbieh (IPMI, 2011)

Towards Real-Time 3D US to CT Bone Image Registration Using Phase and Curvature Feature Based GMM Matching. - Anna Brounstein; Ilker Hacihaliloglu; Pierre Guy; Antony J. Hodgson; Rafeef Abugharbieh (MICCAI (1), 2011)

Detecting Structure in Diffusion Tensor MR Images. - K. Krishna Nand; Rafeef Abugharbieh; Brian G. Booth; Ghassan Hamarneh (MICCAI (2), 2011)

Connectivity-Informed fMRI Activation Detection. - Bernard Ng; Rafeef Abugharbieh; Gaël Varoquaux; Jean-Baptiste Poline; Bertrand Thirion (MICCAI (2), 2011)

Active Learning for Interactive 3D Image Segmentation. - Andrew Top; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (3), 2011)

Modeling Spatiotemporal Structure in fMRI Brain Decoding Using Generalized Sparse Classifiers. - Bernard Ng; Rafeef Abugharbieh (PRNI, 2011)

Diffusion tensor image processing using biquaternions. - K. Krishna Nand; Ghassan Hamarneh; Rafeef Abugharbieh (ISBI, 2012)

Robust Dense Endoscopic Stereo Reconstruction for Minimally Invasive Surgery. - Sylvain Bernhardt; Julien Abi-Nahed; Rafeef Abugharbieh (MCV, 2012)

3D Ultrasound-CT Registration in Orthopaedic Trauma Using GMM Registration with Optimized Particle Simulation-Based Data Reduction. - Ilker Hacihaliloglu; Anna Brounstein; Pierre Guy; Antony J. Hodgson; Rafeef Abugharbieh (MICCAI (2), 2012)

Deconfounding the Effects of Resting State Activity on Task Activation Detection in fMRI. - Burak Yoldemir; Bernard Ng; Rafeef Abugharbieh (MBIA, 2012)

Connectivity-informed Sparse Classifiers for fMRI Brain Decoding. - Bernard Ng; Viviana Siless; Gaël Varoquaux; Jean-Baptiste Poline; Bertrand Thirion; Rafeef Abugharbieh (PRNI, 2012)

Modeling Brain Activation in fMRI Using Group MRF. - Bernard Ng; Ghassan Hamarneh; Rafeef Abugharbieh (IEEE Trans. Medical Imaging, 2012)

Group Replicator Dynamics: A Novel Group-Wise Evolutionary Approach for Sparse Brain Network Detection. - Bernard Ng; Martin J. McKeown; Rafeef Abugharbieh (IEEE Trans. Medical Imaging, 2012)

Fiber Connectivity Integrated Brain Activation Detection. - Burak Yoldemir; Bernard Ng; Todd S. Woodward; Rafeef Abugharbieh (IPMI, 2013)

Real-time extraction of local phase features from volumetric medical image data. - Alborz Amir-Khalili; Antony J. Hodgson; Rafeef Abugharbieh (ISBI, 2013)

Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. - Alborz Amir-Khalili; Masoud S. Nosrati; Jean-Marc Peyrat; Ghassan Hamarneh; Rafeef Abugharbieh (AE-CAI, 2013)

3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery. - Alborz Amir-Khalili; Jean-Marc Peyrat; Ghassan Hamarneh; Rafeef Abugharbieh (Abdominal Imaging, 2013)

Overlapping Replicator Dynamics for Functional Subnetwork Identification. - Burak Yoldemir; Bernard Ng; Rafeef Abugharbieh (MICCAI (2), 2013)

Biomechanical kidney model for predicting tumor displacement in the presence of external pressure load. - Ivan Figueroa-Garcia; Jean-Marc Peyrat; Ghassan Hamarneh; Rafeef Abugharbieh (ISBI, 2014)

Effects of tractography approach on consistency between anatomical and functional connectivity estimates. - Burak Yoldemir; Bernard Ng; Rafeef Abugharbieh (ISBI, 2014)

Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy. - Alborz Amir-Khalili; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (1), 2014)

Robust Bone Detection in Ultrasound Using Combined Strain Imaging and Envelope Signal Power Detection. - Mohammad Arafat Hussain; Antony J. Hodgson; Rafeef Abugharbieh (MICCAI (1), 2014)

Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video. - Jeremy Kawahara; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh; Ghassan Hamarneh (MICCAI (2), 2014)

Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors. - Masoud S. Nosrati; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh; Ghassan Hamarneh (MICCAI (2), 2014)

Confidence Weighted Local Phase Features for Robust Bone Surface Segmentation in Ultrasound. - Niamul Quader; Antony J. Hodgson; Rafeef Abugharbieh (CLIP@MICCAI, 2014)

Coupled Stable Overlapping Replicator Dynamics for Multimodal Brain Subnetwork Identification. - Burak Yoldemir; Bernard Ng; Rafeef Abugharbieh (IPMI, 2015)

Comparison of structural connectivity metrics for multimodal brain image analysis. - Mohammad Bajammal; Burak Yoldemir; Rafeef Abugharbieh (ISBI, 2015)

A 3D dynamic biomechanical swallowing model for training and diagnosis of dysphagia. - Moshiur Rahman Farazi; Bonnie Martin-Harris; Negar M. Harandi; Sidney S. Fels; Rafeef Abugharbieh (ISBI, 2015)

Subject-specific biomechanical modelling of the oropharynx with application to speech production. - Negar M. Harandi; Jonghye Woo; Moshiur Rahman Farazi; Ian Stavness; Maureen Stone 001; Sidney S. Fels; Rafeef Abugharbieh (ISBI, 2015)

Automatic assessment of developmental dysplasia of the hip. - Niamul Quader; Antony J. Hodgson; Kishore Mulpuri; Thomas Savage; Rafeef Abugharbieh (ISBI, 2015)

Improved functional cortical parcellation using a neighborhood-information-embedded affinity matrix. - Chendi Wang; Burak Yoldemir; Rafeef Abugharbieh (ISBI, 2015)

Automatic Vessel Segmentation from Pulsatile Radial Distension. - Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (3), 2015)

Multimodal Cortical Parcellation Based on Anatomical and Functional Brain Connectivity. - Chendi Wang; Burak Yoldemir; Rafeef Abugharbieh (MICCAI (3), 2015)

Automatic extraction of bone surfaces from 3D ultrasound images in orthopaedic trauma cases. - Ilker Hacihaliloglu; Pierre Guy; Antony J. Hodgson; Rafeef Abugharbieh (Int. J. Comput. Assist. Radiol. Surg., 2015)

3D segmentation of the tongue in MRI: a minimally interactive model-based approach. - Negar M. Harandi; Rafeef Abugharbieh; Sidney S. Fels (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2015)

Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video. - Alborz Amir-Khalili; Ghassan Hamarneh; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh (Medical Image Anal., 2015)

Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests. - Mohammad Arafat Hussain; Ghassan Hamarneh; Timothy W. O'Connell; Mohammed F. Mohammed; Rafeef Abugharbieh (MLMI@MICCAI, 2016)

Towards Reliable Automatic Characterization of Neonatal Hip Dysplasia from 3D Ultrasound Images. - Niamul Quader; Antony J. Hodgson; Kishore Mulpuri; Anthony Cooper; Rafeef Abugharbieh (MICCAI (1), 2016)

Modularity Reinforcement for Improving Brain Subnetwork Extraction. - Chendi Wang; Bernard Ng; Rafeef Abugharbieh (MICCAI (1), 2016)

Endoscopic scene labelling and augmentation using intraoperative pulsatile motion and colour appearance cues with preoperative anatomical priors. - Masoud S. Nosrati; Alborz Amir-Khalili; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Rafeef Abugharbieh; Ghassan Hamarneh (Int. J. Comput. Assist. Radiol. Surg., 2016)

Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery. - Masoud S. Nosrati; Rafeef Abugharbieh; Jean-Marc Peyrat; Julien Abinahed; Osama Al-Alao; Abdulla Al-Ansari; Ghassan Hamarneh (IEEE Trans. Medical Imaging, 2016)

Stable Overlapping Replicator Dynamics for Brain Community Detection. - Burak Yoldemir; Bernard Ng; Rafeef Abugharbieh (IEEE Trans. Medical Imaging, 2016)

Multimodal Brain Subnetwork Extraction Using Provincial Hub Guided Random Walks. - Chendi Wang; Bernard Ng; Rafeef Abugharbieh (IPMI, 2017)

Scalable and Fault Tolerant Platform for Distributed Learning on Private Medical Data. - Alborz Amir-Khalili; Soheil Kianzad; Rafeef Abugharbieh; Ivan Beschastnikh (MLMI@MICCAI, 2017)

Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs. - Mohammad Arafat Hussain; Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (MICCAI (3), 2017)

Collage CNN for Renal Cell Carcinoma Detection from CT. - Mohammad Arafat Hussain; Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (MLMI@MICCAI, 2017)

Automatic Near Real-Time Evaluation of 3D Ultrasound Scan Adequacy for Developmental Dysplasia of the Hip. - Olivia Paserin; Kishore Mulpuri; Anthony Cooper; Antony J. Hodgson; Rafeef Abugharbieh (CARE/CLIP@MICCAI, 2017)

A 3D Femoral Head Coverage Metric for Enhanced Reliability in Diagnosing Hip Dysplasia. - Niamul Quader; Antony J. Hodgson; Kishore Mulpuri; Anthony Cooper; Rafeef Abugharbieh (MICCAI (1), 2017)

Subject-specific biomechanical modelling of the oropharynx: towards speech production. - Negar M. Harandi; Ian Stavness; Jonghye Woo; Maureen Stone 001; Rafeef Abugharbieh; Sidney S. Fels (Comput. methods Biomech. Biomed. Eng. Imaging Vis., 2017)

Modelling and extraction of pulsatile radial distension and compression motion for automatic vessel segmentation from video. - Alborz Amir-Khalili; Ghassan Hamarneh; Rafeef Abugharbieh (Medical Image Anal., 2017)

Fast and automatic bone segmentation and registration of 3D ultrasound to CT for the full pelvic anatomy: a comparative study. - Prashant U. Pandey; Pierre Guy; Antony J. Hodgson; Rafeef Abugharbieh (Int. J. Comput. Assist. Radiol. Surg., 2018)

Coactivated Clique Based Multisource Overlapping Brain Subnetwork Extraction. - Chendi Wang; Rafeef Abugharbieh (CoRR, 2018)