MEXCOwalk: mutual exclusion and coverage based random walk to identify cancer modules. - Rafsan Ahmed; Ilyes Baali; Cesim Erten; Evis Hoxha; Hilal Kazan (Bioinform., 2020)

EasyNER: A Customizable Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical Text. - Rafsan Ahmed; Petter Berntsson; Alexander Skafte; Salma Kazemi Rashed; Marcus Klang; Adam Barvesten; Ola Olde; William Lindholm; Antton Lamarca Arrizabalaga; Pierre Nugues; Sonja Aits (CoRR, 2023)