Structural Properties of Non-Traditional Drug Targets Present New Challenges for Virtual Screening. - Ragul Gowthaman; Eric J. Deeds; John Karanicolas (J. Chem. Inf. Model., 2013)

TCRmodel: high resolution modeling of T cell receptors from sequence. - Ragul Gowthaman; Brian G. Pierce (Nucleic Acids Res., 2018)

TCR3d: The T cell receptor structural repertoire database. - Ragul Gowthaman; Brian G. Pierce (Bioinform., 2019)

CoV3D: a database of high resolution coronavirus protein structures. - Ragul Gowthaman; Johnathan D. Guest; Rui Yin 004; Jared Adolf-Bryfogle; William R. Schief; Brian G. Pierce (Nucleic Acids Res., 2021)

Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants. - Rui Yin 004; Johnathan D. Guest; Ghazaleh Taherzadeh; Ragul Gowthaman; Ipsa Mittra; Jane Quackenbush; Brian G. Pierce (PLoS Comput. Biol., 2021)

TCRmodel2: high-resolution modeling of T cell receptor recognition using deep learning. - Rui Yin 004; Helder Veras Ribeiro filho; Valerie Lin; Ragul Gowthaman; Melyssa Cheung; Brian G. Pierce (Nucleic Acids Res., 2023)