Effective Utilization of Paired Reads to Improve Length and Accuracy of Contigs in Genome Assembly. - Rahul Nihalani; Srinivas Aluru (BCB, 2016)

Probabilistic estimation of overlap graphs for large sequence datasets. - Rahul Nihalani; Sriram P. Chockalingam; Shaowei Zhu 001; Vijay V. Vazirani; Srinivas Aluru (BIBM, 2017)

Techniques to Improve Genome Assembly Quality. - Rahul Nihalani (2019)

Fast de Bruijn Graph Compaction in Distributed Memory Environments. - Tony Pan; Rahul Nihalani; Srinivas Aluru (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Enhancing Grammatical Error Detection using BERT with Cleaned Lang-8 Dataset. - Rahul Nihalani; Kushal Shah (CoRR, 2024)

Disambiguating a Soft Metagenomic Clustering. - Rahul Nihalani; Jaroslaw Zola; Srinivas Aluru (J. Comput. Biol., 2025)