Combining statistical alignment and phylogenetic footprinting to detect regulatory elements. - Rahul Satija; Lior Pachter; Jotun Hein (Bioinform., 2008)

Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques. - Rahul Satija; Jotun Hein; Gerton Lunter (Bioinform., 2010)

Developmental diversification of cortical inhibitory interneurons. - Christian Mayer; Christoph Hafemeister; Rachel C. Bandler; Robert Machold; Renata Batista Brito; Xavier Jaglin; Kathryn Allaway; Andrew Butler; Gord Fishell; Rahul Satija (Nat., 2018)

The human body at cellular resolution: the NIH Human Biomolecular Atlas Program. - Michael P. Snyder; Shin Lin; Amanda Posgai; Mark Atkinson; Aviv Regev; Jennifer Rood; Orit Rozenblatt-Rosen; Leslie Gaffney; Anna Hupalowska; Rahul Satija; Nils Gehlenborg; Jay Shendure; et al. (Nat., 2019)

SEraster: a rasterization preprocessing framework for scalable spatial omics data analysis. - Gohta Aihara; Kalen Clifton; Mayling Chen; Zhuoyan Li; Lyla Atta; Brendan F. Miller; Rahul Satija; John W. Hickey; Jean Fan (Bioinform., 2024)