Secondary structure predictions for long RNA sequences based on inversion excursions: preliminary results. - Daniel T. Yehdego; Boyu Zhang 002; Michela Taufer; Vikram Kumar Reddy Kodimala; Rahulsimham Vegesna; Sameera Viswakula; Kyle L. Johnson; Ming-Ying Leung (BCB, 2012)

Halogen Interactions in Protein-Ligand Complexes: Implications of Halogen Bonding for Rational Drug Design. - Suman Sirimulla; Jake B. Bailey; Rahulsimham Vegesna; Mahesh Narayan (J. Chem. Inf. Model., 2013)

PRADA: pipeline for RNA sequencing data analysis. - Wandaliz Torres-García; Siyuan Zheng; Andrey Sivachenko; Rahulsimham Vegesna; Qianghu Wang; Rong Yao; Michael F. Berger; John N. Weinstein; Gad Getz; Roel G. W. Verhaak (Bioinform., 2014)