Uncovering distinct protein-network topologies in heterogeneous cell populations. - Jakob Wieczorek; Rahuman S. Malik-Sheriff; Yessica Fermin; Hernán E. Grecco; Eli Zamir; Katja Ickstadt (BMC Syst. Biol., 2015)

BioModels: expanding horizons to include more modelling approaches and formats. - Mihai Glont; Tung V. N. Nguyen; Martin Graesslin; Robert Hälke; Raza Ali; Jochen Schramm; Sarala M. Wimalaratne; Varun B. Kothamachu; Nicolas Rodriguez 001; Maciej J. Swat; Jurgen Eils; Roland Eils; et al. (Nucleic Acids Res., 2018)

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2. - Michael Hucka; Frank T. Bergmann; Claudine Chaouiya; Andreas Dräger; Stefan Hoops; Sarah M. Keating; Matthias König 003; Nicolas Le Novère; Chris J. Myers; Brett G. Olivier; Sven Sahle; James C. Schaff; et al. (J. Integr. Bioinform., 2019)

BioModels Parameters: a treasure trove of parameter values from published systems biology models. - Mihai Glont; Chinmay Arankalle; Krishan K. Tiwari; Tung V. N. Nguyen; Henning Hermjakob; Rahuman S. Malik-Sheriff (Bioinform., 2020)

The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE). - Dagmar Waltemath; Martin Golebiewski; Michael L. Blinov; Padraig Gleeson; Henning Hermjakob; Michael Hucka; Esther Thea Inau; Sarah M. Keating; Matthias König 003; Olga Krebs; Rahuman S. Malik-Sheriff; David P. Nickerson; et al. (J. Integr. Bioinform., 2020)

BioModels - 15 years of sharing computational models in life science. - Rahuman S. Malik-Sheriff; Mihai Glont; Tung V. N. Nguyen; Krishan K. Tiwari; Matthew G. Roberts; Ashley Xavier; Manh T. Vu; Jinghao Men; Matthieu Maire; Sarubini Kananathan; Emma L. Fairbanks; Johannes P. Meyer; et al. (Nucleic Acids Res., 2020)

Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. - Anna Niarakis; Martin Kuiper; Marek Ostaszewski; Rahuman S. Malik-Sheriff; Cristina Casals-Casas; Denis Thieffry; Tom C. Freeman; Paul D. Thomas; Vasundra Touré; Vincent Noël; Gautier Stoll; Julio Saez-Rodriguez; et al. (Briefings Bioinform., 2021)

KNIME workflow for retrieving causal drug and protein interactions, building networks, and performing topological enrichment analysis demonstrated by a DILI case study. - Barbara Füzi; Rahuman S. Malik-Sheriff; Emma J. Manners; Henning Hermjakob; Gerhard F. Ecker (J. Cheminformatics, 2022)

The European Bioinformatics Institute (EMBL-EBI) in 2021. - Gaia Cantelli; Alex Bateman; Cath Brooksbank; Anton I. Petrov; Rahuman S. Malik-Sheriff; Michele Ide-Smith; Henning Hermjakob; Paul Flicek; Rolf Apweiler; Ewan Birney; Johanna R. McEntyre (Nucleic Acids Res., 2022)

BioSimulators: a central registry of simulation engines and services for recommending specific tools. - Bilal Shaikh; Lucian P. Smith; Dan Vasilescu; Gnaneswara Marupilla; Michael Wilson; Eran Agmon; Henry Agnew; Steven S. Andrews; Azraf Anwar; Moritz E. Beber; Frank T. Bergmann; David Brooks 006; et al. (Nucleic Acids Res., 2022)

Building digital twins of the human immune system: toward a roadmap. - Reinhard C. Laubenbacher; Anna Niarakis; Tomás Helikar; Gary An; B. Shapiro; Rahuman S. Malik-Sheriff; T. J. Sego; Adam C. Knapp; Paul Macklin; James A. Glazier (npj Digit. Medicine, 2022)