PHI-base: a new database for pathogen host interactions. - Rainer Winnenburg; Thomas K. Baldwin; Martin Urban; Christopher J. Rawlings; Jacob Köhler; Kim E. Hammond-Kosack (Nucleic Acids Res., 2006)

The OXL format for the exchange of integrated datasets. - Jan Taubert; Klaus Peter Sieren; Matthew Hindle; Berend Hoekman; Rainer Winnenburg; Stephan Philippi; Christopher J. Rawlings; Jacob Köhler (J. Integr. Bioinform., 2007)

Mutation tagging with gene identifiers applied to membrane protein stability prediction. - Rainer Winnenburg; Conrad Plake; Michael Schroeder 001 (AIMM, 2008)

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? - Rainer Winnenburg; Thomas Wächter; Conrad Plake; Andreas Doms; Michael Schroeder 001 (Briefings Bioinform., 2008)

PHI-base update: additions to the pathogen-host interaction database. - Rainer Winnenburg; Martin Urban; Andrew M. Beacham; Thomas K. Baldwin; Sabrina Holland; Magdalen Lindeberg; Hilde Hansen; Christopher J. Rawlings; Kim E. Hammond-Kosack; Jacob Köhler (Nucleic Acids Res., 2008)

Improved mutation tagging with gene identifiers applied to membrane protein stability prediction. - Rainer Winnenburg; Conrad Plake; Michael Schroeder 001 (BMC Bioinform., 2009)

GoGene: gene annotation in the fast lane. - Conrad Plake; Loïc Royer; Rainer Winnenburg; Jörg Hakenberg; Michael Schroeder 001 (Nucleic Acids Res., 2009)

MeMotif: a database of linear motifs in α-helical transmembrane proteins. - Annalisa Marsico; Kerstin Scheubert; Anne Tuukkanen; Andreas Henschel; Christof Winter; Rainer Winnenburg; Michael Schroeder 001 (Nucleic Acids Res., 2010)

SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. - Saskia Preissner; Katharina Kroll; Mathias Dunkel; Christian Senger; Gady Goldsobel; Daniel Kuzman; Stefan Günther; Rainer Winnenburg; Michael Schroeder 001; Robert Preissner (Nucleic Acids Res., 2010)

Issues in Creating and Maintaining Value Sets for Clinical Quality Measures. - Rainer Winnenburg; Olivier Bodenreider (AMIA, 2012)

The NLM Value Set Authority Center at 1 year. - Steven Emrick; Duc Nguyen; Pishing Chiang; Philip Chuang; Maureen Madden; Rainer Winnenburg; Robert C. McClure; Ivor D'Souza; Olivier Bodenreider (AMIA, 2013)

Metrics for assessing the quality of value sets in clinical quality measures. - Rainer Winnenburg; Olivier Bodenreider (AMIA, 2013)

Aligning Pharmacologic Classes Between MeSH and ATC. - Rainer Winnenburg; Laritza Rodriguez; Fiona M. Callaghan; Alfred Sorbello; Ana Szarfman; Olivier Bodenreider (VDOS+DO@ICBO, 2013)

The NLM Value Set Authority Center. - Olivier Bodenreider; Duc Nguyen; Pishing Chiang; Philip Chuang; Maureen Madden; Rainer Winnenburg; Robert C. McClure; Steven Emrick; Ivor D'Souza (MedInfo, 2013)

Exploring Pharmacoepidemiologic Groupings of Drugs from a Clinical Perspective. - Rainer Winnenburg; Olivier Bodenreider (MedInfo, 2013)

Creating, Maintaining and Publishing Value Sets in the VSAC. - Emir Khatipov; Maureen Madden; Pishing Chiang; Philip Chuang; Duc Nguyen; Ivor D'Souza; Rainer Winnenburg; Olivier Bodenreider; Julia L. Skapik; Robert C. McClure; Steven Emrick (AMIA, 2014)

Desiderata for an authoritative Representation of MeSH in RDF. - Rainer Winnenburg; Olivier Bodenreider (AMIA, 2014)

A framework for assessing the consistency of drug classes across sources. - Rainer Winnenburg; Olivier Bodenreider (J. Biomed. Semant., 2014)

Extending the coverage of phenotypes in SNOMED CT through post-coordination. - Ferdinand Dhombres; Rainer Winnenburg; James T. Case; Olivier Bodenreider (MedInfo, 2015)

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT. - Rainer Winnenburg; Jonathan M. Mortensen; Olivier Bodenreider (J. Biomed. Semant., 2015)

Exploring adverse drug events at the class level. - Rainer Winnenburg; Alfred Sorbello; Olivier Bodenreider (J. Biomed. Semant., 2015)

A method for systematic discovery of adverse drug events from clinical notes. - Guan Wang; Kenneth Jung; Rainer Winnenburg; Nigam H. Shah (J. Am. Medical Informatics Assoc., 2015)

Leveraging MEDLINE indexing for pharmacovigilance - Inherent limitations and mitigation strategies. - Rainer Winnenburg; Alfred Sorbello; Anna Ripple; Rave Harpaz; Joseph M. Tonning; Ana Szarfman; Henry Francis; Olivier Bodenreider (J. Biomed. Informatics, 2015)

The digital revolution in phenotyping. - Anika Oellrich; Nigel Collier; Tudor Groza; Dietrich Rebholz-Schuhmann; Nigam Shah; Olivier Bodenreider; Mary Regina Boland; Ivo I. Georgiev; Hongfang Liu; Kevin M. Livingston; Augustin Luna; Ann-Marie Mallon; et al. (Briefings Bioinform., 2016)

Generalized enrichment analysis improves the detection of adverse drug events from the biomedical literature. - Rainer Winnenburg; Nigam H. Shah (BMC Bioinform., 2016)

Eliciting the Intension of Drug Value Sets - Principles and Quality Assurance Applications. - Nathan J. Bahr; Scott D. Nelson; Rainer Winnenburg; Olivier Bodenreider (MedInfo, 2017)

Interoperability of Medication Classification Systems: Lessons Learned Mapping Established Pharmacologic Classes (EPCs) to SNOMED CT. - Scott D. Nelson; Jaqui Parker; Robert F. Lario; Rainer Winnenburg; Mark S. Erlbaum; Michael J. Lincoln; Olivier Bodenreider (MedInfo, 2017)

Toward multimodal signal detection of adverse drug reactions. - Rave Harpaz; William DuMouchel; Martijn J. Schuemie; Olivier Bodenreider; Carol Friedman; Eric Horvitz; Anna Ripple; Alfred Sorbello; Ryen W. White; Rainer Winnenburg; Nigam H. Shah (J. Biomed. Informatics, 2017)