A 5/4-approximation algorithm for minimum 2-edge-connectivity. - Raja Jothi; Balaji Raghavachari; Subramanian Varadarajan (SODA, 2003)

Load balancing for reliable multicast. - Chao Gong 006; Ovidiu Daescu; Raja Jothi; Balaji Raghavachari; Kamil Saraç (Communications, Internet, and Information Technology, 2004)

Dynamic dual-homing protection in WDM mesh networks. - Vinod Vokkarane; Jianping Wang 001; Xiangtong Qi; Raja Jothi; Balaji Raghavachari; Jason P. Jue (ICC, 2004)

Minimum Latency Tours and the k-Traveling Repairmen Problem. - Raja Jothi; Balaji Raghavachari (LATIN, 2004)

Optimal placement of NAK-suppressing agents for reliable multicast: a partial deployment case. - Ovidiu Daescu; Raja Jothi; Balaji Raghavachari; Kamil Saraç (SAC, 2004)

Survivable network design: the capacitated minimum spanning network problem. - Raja Jothi; Balaji Raghavachari (Inf. Process. Lett., 2004)

Predicting protein-protein interaction by searching evolutionary tree automorphism space. - Raja Jothi; Maricel G. Kann; Teresa M. Przytycka (ISMB (Supplement of Bioinformatics), 2005)

Approximation algorithms for the capacitated minimum spanning tree problem and its variants in network design. - Raja Jothi; Balaji Raghavachari (ACM Trans. Algorithms, 2005)

Decomposition of overlapping protein complexes: A graph theoretical method for analyzing static and dynamic protein associations. - Elena Zotenko; Katia S. Guimarães; Raja Jothi; Teresa M. Przytycka (Algorithms Mol. Biol., 2006)

COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations. - Raja Jothi; Elena Zotenko; Asba Tasneem; Teresa M. Przytycka (Bioinform., 2006)

Load-balanced agent activation for value-added network services. - Chao Gong 006; Kamil Saraç; Ovidiu Daescu; Balaji Raghavachari; Raja Jothi (Comput. Commun., 2006)

Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive assessment. - Raja Jothi; Teresa M. Przytycka; L. Aravind (BMC Bioinform., 2007)

Approximating the k-traveling repairman problem with repairtimes. - Raja Jothi; Balaji Raghavachari (J. Discrete Algorithms, 2007)

DOMINE: a database of protein domain interactions. - Balaji Raghavachari; Asba Tasneem; Teresa M. Przytycka; Raja Jothi (Nucleic Acids Res., 2008)

Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks. - Mei Liu; Xue-wen Chen 001; Raja Jothi (Bioinform., 2009)

Degree-bounded minimum spanning trees. - Raja Jothi; Balaji Raghavachari (Discret. Appl. Math., 2009)

Improved approximation algorithms for the single-sink buy-at-bulk network design problems. - Raja Jothi; Balaji Raghavachari (J. Discrete Algorithms, 2009)

DOMINE: a comprehensive collection of known and predicted domain-domain interactions. - Sailu Yellaboina; Asba Tasneem; Dmitri V. Zaykin; Balaji Raghavachari; Raja Jothi (Nucleic Acids Res., 2011)

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data. - Pengyi Yang; Xiaofeng Zheng; Vivek Jayaswal; Guang Hu; Jean Yee Hwa Yang; Raja Jothi (PLoS Comput. Biol., 2015)

Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data. - Pengyi Yang; Sean J. Humphrey; David E. James; Yee Hwa Yang; Raja Jothi (Bioinform., 2016)