Segmentation of Bacterial Cells in Biofilms Using an Overlapped Ellipse Fitting Technique. - Dilanga Abeyrathna; Terrance Life; Shailabh Rauniyar; Shankarachary Ragi; Rajesh Kumar Sani; Parvathi Chundi (BIBM, 2021)

GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition. - Ernest Basile Fotseu Fotseu; Thierry Kongne Nembot; Rajesh Kumar Sani; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba; Alain Bertrand Bomgni (BIBM, 2021)

Prediction of essential genes in G20 using machine learning model. - Thierry Kongne Nembot; Ernest Basile Fotseu Fotseu; Rajesh Kumar Sani; Etienne Z. Gnimpieba; Carol Lushbough; Alain Bertrand Bomgni (BIBM, 2021)

Integration of text mining and biological network analysis to access essential genes in Desulfovibrio alaskensis G20. - Priya Saxena; Abhilash Kumar Tripathi; Payal Thakur; Shailabh Rauniyar; Vinoj Gopalakrishnan; Ram Nageena Singh; Mathew A. Olakunle; Etienne Z. Gnimpieba; Rajesh Kumar Sani (BIBM, 2021)

Identifying genes involved in biocorrosion from the literature using text-mining. - Payal Thakur; Shailabh Rauniyar; Abhilash Kumar Tripathi; Priya Saxena; Vinoj Gopalakrishnan; Ram Nageena Singh; Mathew A. Olakunle; Etienne Z. Gnimpieba; Rajesh Kumar Sani (BIBM, 2021)

Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis. - Abhilash Kumar Tripathi; Priya Saxena; Payal Thakur; Shailabh Rauniyar; Vinoj Gopalakrishnan; Ram Nageena Singh; Mathew A. Olakunle; Etienne Z. Gnimpieba; Rajesh Kumar Sani (BIBM, 2021)

Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set. - Alain Bertrand Bomgni; Ernest Basile Fotseu Fotseu; Daril Raoul Kengne Wambo; Rajesh Kumar Sani; Carol Lushbough; Etienne Z. Gnimpieba (BIBM, 2022)

Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets. - Sam Haas; Timothy W. Hartman; Bichar Dip Shrestha Gurung; Tuyen Do; Rajesh Kumar Sani; Venkataramana Gadhamshetty; Etienne Z. Gnimpieba (BIBM, 2022)

Title: Challenges in single cells sequencing Microbial community and biofilm: A case of Oleidesulfovibrio alaskensis G20 NGS protocol. - Ram Nageena Singh; Etienne Z. Gnimpieba; Rajesh Kumar Sani (BIBM, 2022)

A Morphological Post-Processing Approach for Overlapped Segmentation of Bacterial Cell Images. - Dilanga Abeyrathna; Shailabh Rauniyar; Rajesh Kumar Sani; Pei-Chi Huang (Mach. Learn. Knowl. Extr., 2022)

Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20. - Ram Nageena Singh; Etienne Z. Gnimpieba; Rajesh Kumar Sani (BIBM, 2023)

Machine Learning Approach to Estimate Volumetric Quantification of 2D SEM Images of Biofilms. - Dilanga Abeyrathna; Ram Singh; Samira Badrloo; Rajesh Kumar Sani; Mahadevan Subramaniam (BIBM, 2024)

NFB-Checker: An AI/ML-Powered Microorganism Nitrogen Fixation Susceptibility Prediction from Gene Collection. - Tuyen Do; Shiva Aryal; Bichar Dip Shrestha Gurung; Diing D. M. Agany; Nick Klein; Ruanbao Zhou; Rajesh Kumar Sani; Etienne Z. Gnimpieba (BIBM, 2024)

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities. - Etienne Z. Gnimpieba; Timothy W. Hartman; Tuyen Do; Jessica Zylla; Shiva Aryal; Samuel J. Haas; Diing D. M. Agany; Bichar Dip Shrestha Gurung; Valena Doe; Zelaikha B. Yosufzai; Daniel Pan; Ross Campbell; et al. (Briefings Bioinform., 2024)