Protein structure prediction - An Ab initio approach. - Rajgopal Srinivasan; George D. Rose (ECC, 2003)

Ab Initio Protein Folding Using LINUS. - Rajgopal Srinivasan; Patrick J. Fleming; George D. Rose (Numerical Computer Methods, Part D, 2004)

PlasmoID: A P. falciparum Information Discovery Tool. - Aditya Rao; Sri Jyothsna Yeleswarapu; Gudladona Raghavendra; Rajgopal Srinivasan; Gopalakrishnan Bulusu (Silico Biol., 2009)

Bio Suite as Teaching Platform in a Virtual Environment. - Usha Manne; Sowjanya Gvl; Meenakshi Pradhan; Harini Srinivasan; Navneet Bung; Rajgopal Srinivasan; Gopalakrishnan Bulusu (T4E, 2012)

A pipeline to extract drug-adverse event pairs from multiple data sources. - Sri Jyothsna Yeleswarapu; Aditya Rao; Thomas Joseph; Vangala Saipradeep; Rajgopal Srinivasan (BMC Medical Informatics Decis. Mak., 2014)

Plugin for concept-assisted search and navigation on PUBMED. - Thomas Joseph; Vangala Govindakrishnan Saipradeep; Sujatha Kotte; Aditya Rao; Rajgopal Srinivasan (BIBM, 2015)

UIMA based solution in pharma text. - Aditya Rao; Thomas Joseph; Vangala Govindakrishnan Saipradeep; Rajgopal Srinivasan (BIBM, 2015)

Compressed Sensing Methods for DNA Microarrays, RNA Interference, and Metagenomics. - Aditya Rao; Deepthi P.; C. H. Renumadhavi; M. Girish Chandra; Rajgopal Srinivasan (J. Comput. Biol., 2015)

Kmerlight: fast and accurate k-mer abundance estimation. - Naveen Sivadasan; Rajgopal Srinivasan; Kshama Goyal (CoRR, 2016)

Joint Prediction of Branchpoint and Splice Acceptor Sites in pre-mRNA Transcripts Using Sequence to Sequence Networks. - Sanket Rajan Gupte; Rajgopal Srinivasan (BIBM, 2018)

Read Mapping on Genome Variation Graphs. - Naga Sai Kavya Vaddadi; Rajgopal Srinivasan; Naveen Sivadasan (WABI, 2019)

Sequence Alignment on Directed Graphs. - Vaddadi Naga Sai Kavya; Kshitij Tayal; Rajgopal Srinivasan; Naveen Sivadasan (J. Comput. Biol., 2019)

De Novo Structure-Based Drug Design Using Deep Learning. - Sowmya Ramaswamy Krishnan; Navneet Bung; Sarveswara Rao Vangala; Rajgopal Srinivasan; Gopalakrishnan Bulusu; Arijit Roy (J. Chem. Inf. Model., 2022)

MAGE: Strain Level Profiling of Metagenome Samples. - Vidushi Walia; VG Saipradeep; Rajgopal Srinivasan; Naveen Sivadasan (RECOMB-CG, 2023)

Gex2SGen: Designing Drug-like Molecules from Desired Gene Expression Signatures. - Dibyajyoti Das; Broto Chakrabarty; Rajgopal Srinivasan; Arijit Roy (J. Chem. Inf. Model., 2023)

pBRICS: A Novel Fragmentation Method for Explainable Property Prediction of Drug-Like Small Molecules. - Sarveswara Rao Vangala; Sowmya Ramaswamy Krishnan; Navneet Bung; Rajgopal Srinivasan; Arijit Roy (J. Chem. Inf. Model., 2023)

Suitability of large language models for extraction of high-quality chemical reaction dataset from patent literature. - Sarveswara Rao Vangala; Sowmya Ramaswamy Krishnan; Navneet Bung; Dhandapani Nandagopal; Gomathi Ramasamy; Satyam Kumar 010; Sridharan Sankaran; Rajgopal Srinivasan; Arijit Roy (J. Cheminformatics, 2024)