Molecular modeling of the neurophysin I/oxytocin complex. - Rajmund Kazmierkiewicz; Cezary Czaplewski; B. Lammek; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1997)

Molecular modeling of the human vasopressin V2 receptor/agonist complex. - Cezary Czaplewski; Rajmund Kazmierkiewicz; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1998)

United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentials. - Adam Liwo; Rajmund Kazmierkiewicz; Cezary Czaplewski; Malgorzata Groth; Stanislaw Oldziej; Ryszard J. Wawak; Shelly Rackovsky; Matthew R. Pincus; Harold A. Scheraga (J. Comput. Chem., 1998)

Essential dynamics/factor analysis for the interpretation of molecular dynamics trajectories. - Rajmund Kazmierkiewicz; Cezary Czaplewski; B. Lammek; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 1999)

UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody terms. - Adam Liwo; Jaroslaw Pillardy; Cezary Czaplewski; Jooyoung Lee 002; Daniel R. Ripoll; Malgorzata Groth; Sylwia Rodziewicz-Motowidlo; Rajmund Kazmierkiewicz; Ryszard J. Wawak; Stanislaw Oldziej; Harold A. Scheraga (RECOMB, 2000)

Molecular modeling of interactions of the non-peptide antagonist YM087 with the human vasopressin V1a, V2 receptors and with oxytocin receptors. - Artur Gieldon; Rajmund Kazmierkiewicz; Rafal Slusarz; Jerzy Ciarkowski (J. Comput. Aided Mol. Des., 2001)

Energy-based reconstruction of a protein backbone from its -carbon trace by a Monte-Carlo method. - Rajmund Kazmierkiewicz; Adam Liwo; Harold A. Scheraga (J. Comput. Chem., 2002)

Phosphorylation and ATP-binding induced conformational changes in the PrkC, Ser/Thr kinase from B. subtilis. - Pawel Gruszczynski; Michal Obuchowski; Rajmund Kazmierkiewicz (J. Comput. Aided Mol. Des., 2010)

Molecular Dynamics Simulation by GROMACS Using GUI Plugin for PyMOL. - Tomasz Makarewicz; Rajmund Kazmierkiewicz (J. Chem. Inf. Model., 2013)