Using hybrid GA-ANN to predict biological activity of HIV protease inhibitors. - Srinivas R. Alla; Akmal Aulia; Sunil Kumar; Rajni Garg (CIBCB, 2008)

3D-Shape analysis of the HIV-1 protease ligand binding site. - Sunil Kumar; Rajni Garg; Srinivas R. Alla; Xiaoyu Zhang; Vivek K. Jalahalli (CIBCB, 2008)

Possible allosteric interactions of monoindazole-substituted P2 cyclic urea analogues with wild-type and mutant HIV-1 protease. - Rajni Garg; Barun Bhhatarai (J. Comput. Aided Mol. Des., 2008)

Classification of HIV-1 protease crystal structures using Random Forest, linear discriminant analysis and logistic regression. - Gene M. Ko; A. Srinivas Reddy; Sunil Kumar; Srinivas A. Bailey; Rajni Garg (CIBCB, 2010)

Computational Analysis of HIV-1 Protease Protein Binding Pockets. - Gene M. Ko; A. Srinivas Reddy; Sunil Kumar; Barbara A. Bailey; Rajni Garg (J. Chem. Inf. Model., 2010)

Differential evolution-binary particle swarm optimization algorithm for the analysis of aryl β-diketo acids for HIV-1 integrase inhibition. - Gene M. Ko; A. Srinivas Reddy; Sunil Kumar; Rajni Garg; Barbara A. Bailey; Ahmad R. Hadaegh (IEEE Congress on Evolutionary Computation, 2012)

Comparison of RSH with shape signatures and MACT technique for shape analysis of HIV-1 protein. - Alla S. Reddy; Himali Desai; Sunil Kumar; Rajni Garg (CIBCB, 2012)