Machine learning techniques in disease forecasting: a case study on rice blast prediction. - Rakesh Kaundal; Amar S. Kapoor; Gajendra P. S. Raghava (BMC Bioinform., 2006)

Proceedings of the 2012 MidSouth computational biology and bioinformatics society (MCBIOS) conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Dennis Burian; Rakesh Kaundal; Susan Bridges; Doris M. Kupfer (BMC Bioinform., 2012)

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors. - Firoz Ahmed; Rakesh Kaundal; Gajendra P. S. Raghava (BMC Bioinform., 2013)

Identification and characterization of plastid-type proteins from sequence-attributed features using machine learning. - Rakesh Kaundal; Sitanshu S. Sahu; Ruchi Verma; Tyler Weirick (BMC Bioinform., 2013)

Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Dennis Burian; Rakesh Kaundal; Andy D. Perkins; Edward J. Perkins; Doris M. Kupfer; Gordon K. Springer (BMC Bioinform., 2013)

Predicting genome-scale Arabidopsis-Pseudomonas syringae interactome using domain and interolog-based approaches. - Sitanshu S. Sahu; Tyler Weirick; Rakesh Kaundal (BMC Bioinform., 2014)

LacSubPred: predicting subtypes of Laccases, an important lignin metabolism-related enzyme class, using in silico approaches. - Tyler Weirick; Sitanshu S. Sahu; Ramamurthy Mahalingam; Rakesh Kaundal (BMC Bioinform., 2014)

Proceedings of the 2014 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Mikhail G. Dozmorov; Dennis Burian; Andy D. Perkins; Chaoyang Zhang; Peter Hoyt; Rakesh Kaundal (BMC Bioinform., 2014)

Proceedings of the 2016 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference. - Jonathan D. Wren; Inimary T. Toby; Huxiao Hong; Bindu Nanduri; Rakesh Kaundal; Mikhail G. Dozmorov; Shraddha Thakkar (BMC Bioinform., 2016)

In silico prediction of host-pathogen protein interactions in melioidosis pathogen Burkholderia pseudomallei and human reveals novel virulence factors and their targets. - Cristian D. Loaiza; Naveen Duhan; Matthew Lister; Rakesh Kaundal (Briefings Bioinform., 2021)

PredHPI: an integrated web server platform for the detection and visualization of host-pathogen interactions using sequence-based methods. - Cristian D. Loaiza; Rakesh Kaundal (Bioinform., 2021)

deepNEC: a novel alignment-free tool for the identification and classification of nitrogen biochemical network-related enzymes using deep learning. - Naveen Duhan; Jeanette M. Norton; Rakesh Kaundal (Briefings Bioinform., 2022)

deepHPI: a comprehensive deep learning platform for accurate prediction and visualization of host-pathogen protein-protein interactions. - Rakesh Kaundal; Cristian D. Loaiza; Naveen Duhan; Nicholas Flann (Briefings Bioinform., 2022)

TRustDB: A comprehensive bioinformatics resource for understanding the complete Wheat - Stem rust host-pathogen interactome. - Raghav Kataria; Rakesh Kaundal (Database J. Biol. Databases Curation, 2022)