Database Challenges in the Integration of Biomedical Data Sets. - Rakesh Nagarajan; Mushtaq Ahmed; Aditya Phatak (VLDB, 2004)

PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis. - Li-Wei Chang; Burr R. Fontaine; Gary D. Stormo; Rakesh Nagarajan (Nucleic Acids Res., 2007)

caBIG™ Compatibility Review System: Software to Support the Evaluation of Applications Using Defined Interoperability Criteria. - Robert R. Freimuth; Michael W. Schauer; Preeti Lodha; Poornima Govindrao; Rakesh Nagarajan; Christopher G. Chute (AMIA, 2008)

Information Extraction from Medical Documents to Determine Patient Alcohol, Tobacco, and Illicit Drug Use. - Leslie D. McIntosh; Walton Sumner; Bijoy George; Pavan Kalantri; Suhas Khot; Anthony Juehne; Rakesh Nagarajan (AMIA, 2013)

caTissue Suite to OpenSpecimen: Developing an extensible, open source, web-based biobanking management system. - Leslie D. McIntosh; Mukesh K. Sharma; David Mulvihill; Snehil Gupta; Anthony Juehne; Bijoy George; Suhas Khot; Atul Kaushal; Mark A. Watson; Rakesh Nagarajan (J. Biomed. Informatics, 2015)