Vom Metabolismus zur genetischen Sprache. - Ralf Hofestädt (1990)

A Cellular Grammar to Model Metabolic Processes. - Ralf Hofestädt (MIE, 1991)

VARY - The First Expert System for Analysis of Genome Variability. - Ch. Wojahn; Ralf Hofestädt; H.-P. Müller (MIE, 1991)

Simulation metabolischer Prozesse auf der Basis einer grammatikalischen Formalisierung. - Ralf Hofestädt (ASIM, 1991)

Bioinformatik und Umweltinformatik - neue Aspekte und Aufgaben der Informatik. - Dieter Schütt; Ralf Hofestädt (Inform. Forsch. Entwickl., 1992)

Grammatical Formalization of Metabolic Processes. - Ralf Hofestädt (ISMB, 1993)

1. Fachtagung "Informatik in den Biowissenschaften". - Ralf Hofestädt; Fritz Krückeberg; Thomas Lengauer (Künstliche Intell., 1993)

Dynamic Load Balancing Based on the Theory of Cellular Automata. - D. Beerbohm; S. Bresgen; Ralf Hofestädt; X. Huang (EUROSIM, 1994)

Ein wissensbasierter Ansatz zur Diagnose genetischer Krankheiten. - U. Ashauer; Ralf Hofestädt (GMDS, 1994)

Workshop Modellierung der Zelldifferenzierung. - Ralf Hofestädt; Kurt Lautenbach; Markus Löffler (Künstliche Intell., 1994)

Metabolic Pathways and the Detection of Inborn Errors. - B. Gandomi; Ralf Hofestädt; Thomas Pfisterer (German Conference on Bioinformatics, 1996)

Editorial: Informatik in den Biowissenschaften. - Ralf Hofestädt; Markus Löffler; Thomas Lengauer (Informationstechnik Tech. Inform., 1996)

Simulation of load balancing with cellular automata. - Ralf Hofestädt; X. Huang; D. Beerbohm (Simul. Pract. Theory, 1996)

Schema Derivation for WWW Information Sources and Their Integration with Databases in Bioinformatics. - Michael Höding; Ralf Hofestädt; Gunter Saake; Uwe Scholz (ADBIS, 1998)

A promoter model based on different combinations of binding sites. - Niels Grabe; Ralf Hofestädt (German Conference on Bioinformatics, 1998)

The Metabolic Diseases DataBase (MDDB) - A Molecular Database Toolkit for the Detection of Inborne Errors. - Ralf Hofestädt; Manuela Prüß; Uwe Scholz; Holger Urban (German Conference on Bioinformatics, 1998)

Workshop: Molekulare Bioinformatik. - Ralf Hofestädt (GI Jahrestagung, 1998)

A Integrative Molecular Information System. - Ralf Hofestädt (MedInfo, 1998)

Quantitative modeling of biochemical networks. - Ralf Hofestädt; S. Thelen (Silico Biol., 1998)

MARGBench - An Approach for Integration, Modeling and Animation of Metabolic Networks. - Andreas Freier; Ralf Hofestädt; Matthias Lange 001; Uwe Scholz (German Conference on Bioinformatics, 1999)

Predicting transcription factor binding sites by constructing context specific matrices. - Niels Grabe; Ralf Hofestädt (German Conference on Bioinformatics, 1999)

Metabolic Drug Pointing and Information Processing. - Ralf Hofestädt; Ulrike Mischke; Manuela Prüß; Uwe Scholz (MIE, 1999)

Logical and Semantic Database Integration. - Jacob Köhler; Matthias Lange 001; Ralf Hofestädt; Steffen Schulze-Kremer (BIBE, 2000)

Workshop "Molekulare Bioinformatik". - Ralf Hofestädt; Hans-Peter Lenhof (GI Jahrestagung, 2000)

RAMEDIS - Rare Metabolic Diseases Publishing Tool for Genotype-Phenotype Correlation. - Thoralf Töpel; Uwe Scholz; Ulrike Mischke; Dagmar Scheible; Ralf Hofestädt; Friedrich Trefz (German Conference on Bioinformatics, 2001)

Information System for the Support of Research, Diagnosis and Therapy of Inborn Metabolic Diseases. - Ralf Kauert; Thoralf Töpel; Uwe Scholz; Ralf Hofestädt (MedInfo, 2001)

Studien- und Forschungsführer Bioinformatik. - Ralf Hofestädt; Roland Schnee (Spektrum Akadem. Verl., 2002)

Case-based Support of Information Retrieval and Analysis of Molecular Data. - Ralf Hofestädt; Thoralf Töpel (CBMS, 2002)

Information Fusion and Metabolic Network Control. - Andreas Freier; Ralf Hofestädt; Matthias Lange 001; Uwe Scholz (Gene Regulations and Metabolism, 2002)

BioDataServer: A SQL-based service for the online integration of life science data. - Andreas Freier; Ralf Hofestädt; Matthias Lange 001; Uwe Scholz; Andreas Stephanik (Silico Biol., 2002)

Information and simulation systems for the analysis of gene regulation and metabolic pathways (Preface). - Ralf Hofestädt; Nikolay A. Kolchanov; John Reinitz (Silico Biol., 2002)

Supporting genotype-phenotype correlation with the rare metabolic diseases database Ramedis. - Thoralf Töpel; Uwe Scholz; Ulrike Mischke; Dagmar Scheible; Ralf Hofestädt; Friedrich Trefz (Silico Biol., 2002)

Quantitative Petri net model of gene regulated metabolic networks in the cell. - Ming Chen 005; Ralf Hofestädt (Silico Biol., 2003)

IIUDB: An object-oriented system for modelling, integration and analysis of gene controlled metabolic networks. - Andreas Freier; Ralf Hofestädt; Matthias Lange 001 (Silico Biol., 2003)

The 3rd International Conference on Bioinformatics of Genome Regulation and Structure (BGRS 2002) - Preface. - Nikolay A. Kolchanov; Ralf Hofestädt (Silico Biol., 2003)

04281 Abstracts Collection - Integrative Bioinformatics - Aspects of the Virtual Cell. - Julio Collado-Vides; Ralf Hofestädt; Christoph W. Sensen (Integrative Bioinformatics - Aspects of the Virtual Cell, 2004)

An algorithm for linear metabolic pathway alignment. - Ming Chen 005; Ralf Hofestädt (Silico Biol., 2004)

Preface - Dagstuhl Seminar on Integrative Bioinformatics. - Ralf Hofestädt (Silico Biol., 2004)

Molekulare Bioinformatik. - Ralf Hofestädt; Hans-Peter Lenhof (it Inf. Technol., 2004)

STCDB: Signal Transduction Classification Database. - Ming Chen 005; Susana Lin; Ralf Hofestädt (Nucleic Acids Res., 2004)

A medical bioinformatics approach for metabolic disorders: Biomedical data prediction, modeling, and systematic analysis. - Ming Chen 005; Ralf Hofestädt (J. Biomed. Informatics, 2006)

MILAN - A medical information-system linking agents to metabolic networks. - B. Prins; Ralf Hofestädt (J. Integr. Bioinform., 2006)

A Medical Case-Based Reasoning Component for the Rare Metabolic Diseases Database Ramedis. - Thoralf Töpel; Jens Neumann; Ralf Hofestädt (CBMS, 2007)

Extended Backus-Systems for the Representation and Specification of the genome. - Ralf Hofestädt (J. Bioinform. Comput. Biol., 2007)

VINEdb: a data warehouse for integration and interactive exploration of life science data. - Sridhar Hariharaputran; Thoralf Töpel; Björn Brockschmidt; Ralf Hofestädt (J. Integr. Bioinform., 2007)

BioDWH: A Data Warehouse Kit for Life Science Data Integration. - Thoralf Töpel; Benjamin Kormeier; Andreas Klassen; Ralf Hofestädt (J. Integr. Bioinform., 2008)

Daten in den Lebenswissenschaften - Vom Paper über Datenbanken zur integrierten Informationsquelle. - Ralf Hofestädt; Klaus Kuhn 001; Wolfgang Müller 001; Can Türker (GI Jahrestagung, 2009)

Bioinformatik. - Ralf Hofestädt; Ernst W. Mayr (Inform. Spektrum, 2009)

PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats. - Donglin Huang; Yiling Huang; Christian Klukas; Ralf Hofestädt; Ming Chen 005 (BIBM Workshops, 2010)

DAWIS-M.D. - A Data Warehouse System for Metabolic Data. - Klaus Hippe; Benjamin Kormeier; Thoralf Töpel; Sebastian Janowski; Ralf Hofestädt (GI Jahrestagung (2), 2010)

Daten in den Lebenswissenschaften. Vom Papier über Datenbanken zur integrierten Informationsquelle (Vorwort). - Wolfgang Müller 001; Ralf Hofestädt; Klaus A. Kuhn; Can Türker (GI Jahrestagung (2), 2010)

Informationssysteme für die translationale Gesundheitsforschung (Vorwort). - Alfred Winter; Ralf Hofestädt; Klaus A. Kuhn (GI Jahrestagung (1), 2010)

Modeling of Cell-to-Cell Communication Processes with Petri Nets Using the Example of Quorum Sensing. - Sebastian Janowski; Benjamin Kormeier; Thoralf Töpel; Klaus Hippe; Ralf Hofestädt; Nils Willassen; Rafael Friesen; Sebastian Rubert; Daniela Borck; Peik Haugen; Ming Chen 005 (Silico Biol., 2010)

Reconstruction of biological networks based on life science data integration. - Benjamin Kormeier; Klaus Hippe; Patrizio Arrigo; Thoralf Töpel; Sebastian Janowski; Ralf Hofestädt (J. Integr. Bioinform., 2010)

CardioVINEdb: a data warehouse approach for integration of life science data in cardiovascular diseases. - Benjamin Kormeier; Klaus Hippe; Thoralf Töpel; Ralf Hofestädt (J. Integr. Bioinform., 2010)

Prediction of thioredoxin and glutaredoxin target proteins by identifying reversibly oxidized cysteinyl residues. - Hang-mao Lee; Karl J. Dietz; Ralf Hofestädt (J. Integr. Bioinform., 2010)

Visualization and Analysis of a Cardio Vascular Disease- and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches. - Björn Sommer 001; Evgeny S. Tiys; Benjamin Kormeier; Klaus Hippe; Sebastian Janowski; Timofey V. Ivanisenko; Anatoly O. Bragin; Patrizio Arrigo; Pavel Demenkov; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; et al. (J. Integr. Bioinform., 2010)

Daten in den Lebenswissenschaften: Datenbanken als Kommunikationszentrum. - Wolfgang Müller 001; Ralf Hofestädt; Klaus A. Kuhn; Can Türker (GI-Jahrestagung, 2011)

Fundamental Features of Metabolic Computing. - Ralf Hofestädt (MICAI (2), 2011)

MyBioNet: interactively visualize, edit and merge biological networks on the Web. - Donglin Huang; Yiling Huang; Youhuang Bai; Dijun Chen; Ralf Hofestädt; Christian Klukas; Ming Chen 005 (Bioinform., 2011)

Data Warehouses in Bioinformatics: Integration of Molecular Biological Data. - Benjamin Kormeier; Klaus Hippe; Ralf Hofestädt (it Inf. Technol., 2011)

Petri net models for the semi-automatic construction of large scale biological networks. - Ming Chen 005; Sridhar Hariharaputran; Ralf Hofestädt; Benjamin Kormeier; Sarah Spangardt (Nat. Comput., 2011)

KAIS: Ein webbasiertes System zur patientenindividuellen Arzneimittel-Interaktionsprüfung. - Alban Shoshi; Arben Shoshi; Ralf Hofestädt (GI-Jahrestagung, 2012)

A new object-oriented Petri net simulation environment based on modelica. - Sabrina Proß; Bernhard Bachmann; Sebastian Janowski; Ralf Hofestädt (WSC, 2012)

Computational Construction of Specialized Biological Networks. - Hang-mao Lee; Karl J. Dietz; Ralf Hofestädt (J. Bioinform. Comput. Biol., 2013)

Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets. - Björn Sommer 001; Benjamin Kormeier; Pavel Demenkov; Patrizio Arrigo; Klaus Hippe; Özgür Ates; Alexey V. Kochetov; Vladimir A. Ivanisenko; Nikolay A. Kolchanov; Ralf Hofestädt (J. Bioinform. Comput. Biol., 2013)

Editorial. - Ralf Hofestädt; Benjamin Kormeier; Matthias Lange 001; Falk Schreiber; Björn Sommer 001; Stephan Weise (J. Integr. Bioinform., 2013)

Integrative Bioinformatics. - Ming Chen 005; Ralf Hofestädt (Approaches in Integrative Bioinformatics, 2014)

Open problems in Petri net modeling and simulation of biological systems. - Ming Chen 005; Ralf Hofestädt (it Inf. Technol., 2014)

VANESA - A Software Application for the Visualization and Analysis of Networks in System Biology Applications. - Christoph Brinkrolf; Sebastian Janowski; Benjamin Kormeier; Martin Lewinski; Klaus Hippe; Daniela Borck; Ralf Hofestädt (J. Integr. Bioinform., 2014)

Introductory note for BGRS SB-2014 special issue. - Yuriy L. Orlov; Ralf Hofestädt; Nikolay A. Kolchanov (J. Bioinform. Comput. Biol., 2015)

Identifying adverse drug reactions and drug-induced diseases using network-based drug mapping. - Alban Shoshi; Venus Ogultarhan; Tobias Hoppe; Benjamin Kormeier; Ulrich Müller; Ralf Hofestädt (J. Bioinform. Comput. Biol., 2015)

GraphSAW: A web-based system for graphical analysis of drug interactions and side effects using pharmaceutical and molecular data. - Alban Shoshi; Tobias Hoppe; Benjamin Kormeier; Venus Ogultarhan; Ralf Hofestädt (BMC Medical Informatics Decis. Mak., 2015)

KATIS: An eHealth System for Complementary Medicine. - Venus Ogultarhan; Alban Shoshi; Rico Magnucki; Benjamin Kormeier; Ralf Hofestädt (eHealth, 2016)

DaTo: an atlas of biological databases and tools. - Qilin Li; Yincong Zhou; Yingmin Jiao; Zhao Zhang 012; Lin Bai; Li Tong; Xiong Yang; Björn Sommer 001; Ralf Hofestädt; Ming Chen 005 (J. Integr. Bioinform., 2016)

KALIS - An eHealth System for Biomedical Risk Analysis of Drugs. - Alban Shoshi; Ulrich Müller; Arben Shoshi; Venus Ogultarhan; Ralf Hofestädt (eHealth, 2017)

The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes. - Paolo Romano 001; Ralf Hofestädt; Matthias Lange 001; Domenica D'Elia (BMC Bioinform., 2017)

Editorial - Bioinformatics development at the BGRS SB conference series: 10th anniversary. - Yuriy L. Orlov; Nikolay A. Kolchanov; Ralf Hofestädt; Limsoon Wong (J. Bioinform. Comput. Biol., 2017)

Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. - Hamid Hamzeiy; Rabia Suluyayla; Christoph Brinkrolf; Sebastian Jan Janowski; Ralf Hofestädt; Jens Allmer (J. Integr. Bioinform., 2017)

Computational miRNomics - Integrative Approaches. - Ralf Hofestädt; Falk Schreiber; Björn Sommer 001; Jens Allmer (J. Integr. Bioinform., 2017)

Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways. - Hamid Hamzeiy; Rabia Suluyayla; Christoph Brinkrolf; Sebastian Jan Janowski; Ralf Hofestädt; Jens Allmer (GMDS, 2018)

OMPetri: A New Petri Net Simulation Environment Based on OpenModelica. - Ralf Hofestädt; Christoph Brinkrolf; Philo Reipke (ICBBT, 2018)

Heuristic Modeling and 3D Stereoscopic Visualization of a Chlamydomonas reinhardtii Cell. - Niklas Biere; Mehmood Ghaffar; Anja Doebbe; Daniel Jäger; Nils Rothe; Benjamin M. Friedrich; Ralf Hofestädt; Falk Schreiber; Olaf Kruse; Björn Sommer 001 (J. Integr. Bioinform., 2018)

Molecular Relationships between Bronchial Asthma and Hypertension as Comorbid Diseases. - Elena Yu. Bragina; Irina A. Goncharova; Anna F. Garaeva; Evgeniy V. Nemerov; Anastasija A. Babovskaya; Andrey B. Karpov; Yulia V. Semenova; Irina Z. Zhalsanova; Densema E. Gomboeva; Olga V. Saik; Olga I. Zolotareva; Vladimir A. Ivanisenko; et al. (J. Integr. Bioinform., 2018)

shRNA-Induced Knockdown of a Bioinformatically Predicted Target IL10 Influences Functional Parameters in Spontaneously Hypertensive Rats with Asthma. - Tatiana Drevytska; Roman Morhachov; Lesya Tumanovska; Georgiy Portnichenko; Vasyl Nagibin; Oleksiy Boldyriev; Tatiana Lapikova-Bryhinska; Veronika Gurianova; Borys Dons'koi; Maxim B. Freidin; Vladimir A. Ivanisenko; Elena Yu. Bragina; et al. (J. Integr. Bioinform., 2018)

Integrative Analysis of Co-Morbid Multifactorial Diseases. - Ralf Hofestädt; Vladimir A. Ivanisenko (J. Integr. Bioinform., 2018)

Search for New Candidate Genes Involved in the Comorbidity of Asthma and Hypertension Based on Automatic Analysis of Scientific Literature. - Olga V. Saik; Pavel S. Demenkov; Timofey V. Ivanisenko; Elena Yu. Bragina; Maxim B. Freidin; Victor E. Dosenko; Olga I. Zolotareva; Evgeniy L. Choynzonov; Ralf Hofestädt; Vladimir A. Ivanisenko (J. Integr. Bioinform., 2018)

GenCoNet - A Graph Database for the Analysis of Comorbidities by Gene Networks. - Alban Shoshi; Ralf Hofestädt; Olga I. Zolotareva; Marcel Friedrichs; Alex Maier; Vladimir A. Ivanisenko; Victor E. Dosenko; Elena Yu. Bragina (J. Integr. Bioinform., 2018)

Systems biology research at BGRS-2018. - Yuriy L. Orlov; Ralf Hofestädt; Ancha V. Baranova (BMC Syst. Biol., 2019)

Bioinformatics research at BGRS SB-2018. - Yuriy L. Orlov; Ralf Hofestädt; Tatiana V. Tatarinova (J. Bioinform. Comput. Biol., 2019)

Integrative Bioinformatics: History and Future. - Ming Chen 005; Ralf Hofestädt; Jan Taubert (J. Integr. Bioinform., 2019)

JIB.tools 2.0 - A Bioinformatics Registry for Journal Published Tools with Interoperability to bio.tools. - Marcel Friedrichs; Alban Shoshi; Piotr Chmura; Jon C. Ison; Veit Schwämmle; Falk Schreiber; Ralf Hofestädt; Björn Sommer 001 (J. Integr. Bioinform., 2019)

Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields. - Lu Zhu; Ralf Hofestädt; Martin Ester (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Bioinformatics of genome regulation and structure - 2020 papers collection. - Yuriy L. Orlov; Oxana B. Dobrovolskaya; Ming Chen 005; Ralf Hofestädt (J. Integr. Bioinform., 2020)

VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology. - Christoph Brinkrolf; Lennart Ochel; Ralf Hofestädt (Biosyst., 2021)

OverCOVID: an integrative web portal for SARS-CoV-2 bioinformatics resources. - Md. Asif Ahsan; Yongjing Liu; Cong Feng; Ralf Hofestädt; Ming Chen 005 (J. Integr. Bioinform., 2021)

Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21). - Jens Allmer; Mourad Elloumi; Matteo Comin; Ralf Hofestädt (J. Integr. Bioinform., 2021)

International symposium on integrative bioinformatics 2024 - editorial. - Can Türker; Christian Panse; Björn Sommer 001; Marcel Friedrichs; Ralf Hofestädt (J. Integr. Bioinform., 2024)

BGRS: bioinformatics of genome regulation and data integration. - Yuriy L. Orlov; Ming Chen 005; Nikolay A. Kolchanov; Ralf Hofestädt (J. Integr. Bioinform., 2024)

STCDB4ND: a signal transduction classification database for neurological diseases. - Boyan Gong; Sida Li; Yifan Chen; Liya Liu; Ralf Hofestädt; Ming Chen 005 (Database J. Biol. Databases Curation, 2025)

Editorial - 20 years Journal of Integrative Bioinformatics. - Ralf Hofestädt (J. Integr. Bioinform., 2025)