Community Detection in Social and Biological Networks Using Differential Evolution. - Guanbo Jia; Zixing Cai; Mirco Musolesi; Yong Wang 002; Dan A. Tennant; Ralf J. M. Weber; John K. Heath; Shan He 001 (LION, 2012)

MaConDa: a publicly accessible mass spectrometry contaminants database. - Ralf J. M. Weber; Eva Li; Jonathan Bruty; Shan He 001; Mark R. Viant (Bioinform., 2012)

HAMMER: automated operation of mass frontier to construct in silico mass spectral fragmentation libraries. - Jiarui Zhou; Ralf J. M. Weber; James William Allwood; Robert Mistrik; Zexuan Zhu; Zhen Ji; Siping Chen; Warwick B. Dunn; Shan He 001; Mark R. Viant (Bioinform., 2014)

mzML2ISA & nmrML2ISA: generating enriched ISA-Tab metadata files from metabolomics XML data. - Martin Larralde; Thomas N. Lawson; Ralf J. M. Weber; Pablo A. Moreno; Kenneth Haug; Philippe Rocca-Serra; Mark R. Viant; Christoph Steinbeck; Reza M. Salek (Bioinform., 2017)

The future of metabolomics in ELIXIR. - Merlijn N. van Rijswijk; Charlie Beirnaert; Christophe Caron; Marta Cascante; Victoria Dominguez Del Angel; Warwick B. Dunn; Timothy M. D. Ebbels; Franck Giacomoni; Alejandra N. González-Beltrán; Thomas Hankemeier; Kenneth Haug; Jose L. Izquierdo-García; et al. (F1000Research, 2017)

struct: an R/Bioconductor-based framework for standardized metabolomics data analysis and beyond. - Gavin Rhys Lloyd; Andris Jankevics; Ralf J. M. Weber (Bioinform., 2021)

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update. - Enis Afgan; Anton Nekrutenko; Björn A. Grüning; Daniel J. Blankenberg; Jeremy Goecks; Michael C. Schatz; Alexander E. Ostrovsky; Alexandru Mahmoud; Andrew J. Lonie; Anna Syme; Anne Fouilloux; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2022)