AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus. - Jagan Srinivasan; Georg W. Otto; Ulrich Kahlow; Robert Geisler; Ralf J. Sommer (Nucleic Acids Res., 2004)

Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus. - Christoph Dieterich; Waltraud Roeseler; Patrick Sobetzko; Ralf J. Sommer (Nucleic Acids Res., 2007)

Improving the Caenorhabditis elegans Genome Annotation Using Machine Learning. - Gunnar Rätsch; Sören Sonnenburg; Jagan Srinivasan; Hanh Witte; Klaus-Robert Müller; Ralf J. Sommer; Bernhard Schölkopf (PLoS Comput. Biol., 2007)

The art of mechanistic modeling in biology. - Ata Kalirad; Ralf J. Sommer (Nat. Comput. Sci., 2022)

Spatial and temporal heterogeneity alter the cost of plasticity in Pristionchus pacificus. - Ata Kalirad; Ralf J. Sommer (PLoS Comput. Biol., 2024)