Genic Interaction Extraction from MEDLINE Abstracts - A Case Study. - Raluca Uricaru; Liviu Ciortuz (Sci. Ann. Cuza Univ., 2005)

Reliable Bacterial Genome Comparison Tools. - Eric Rivals; Alban Mancheron; Raluca Uricaru (ERCIM News, 2010)

Algorithms for genome comparison applied to bacterial genomes. (Algorithmes de comparaison de génomes appliqués aux génomes bactériens). - Raluca Uricaru (2010)

Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps. - Raluca Uricaru; Alban Mancheron; Eric Rivals (J. Comput. Biol., 2011)

KISSPLICE: de-novo calling alternative splicing events from RNA-seq data. - Gustavo Akio Tominaga Sacomoto; Janice Kielbassa; Rayan Chikhi; Raluca Uricaru; Pavlos Antoniou; Marie-France Sagot; Pierre Peterlongo; Vincent Lacroix (BMC Bioinform., 2012)

Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks. - Patricia Thébault; Romain Bourqui; William Benchimol; Christine Gaspin; Pascal Sirand-Pugnet; Raluca Uricaru; Isabelle Dutour (Briefings Bioinform., 2015)

Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph. - Gaëtan Benoit; Claire Lemaitre; Dominique Lavenier; Erwan Drezen; Thibault Dayris; Raluca Uricaru; Guillaume Rizk (BMC Bioinform., 2015)

YOC, A new strategy for pairwise alignment of collinear genomes. - Raluca Uricaru; Célia Michotey; Hélène Chiapello; Eric Rivals (BMC Bioinform., 2015)

A note on the shortest common superstring of NGS reads. - Tristan Braquelaire; Marie Gasparoux; Mathieu Raffinot; Raluca Uricaru (CoRR, 2016)

On the Shortest Common Superstring of NGS Reads. - Tristan Braquelaire; Marie Gasparoux; Mathieu Raffinot; Raluca Uricaru (TAMC, 2017)

On improving the approximation ratio of the r-shortest common superstring problem. - Tristan Braquelaire; Marie Gasparoux; Mathieu Raffinot; Raluca Uricaru (CoRR, 2018)

Consensus clustering applied to multi-omics disease subtyping. - Galadriel Brière; Élodie Darbo; Patricia Thébault; Raluca Uricaru (BMC Bioinform., 2021)

Approximation and Fixed Parameter Algorithms for the Approximate Cover Problem. - Guillaume Blin; Alexandru Popa 001; Mathieu Raffinot; Raluca Uricaru (SPIRE, 2023)

What Happened in This Pipeline? Diffing Build Logs with CiDiff. - Nicolas Hubner; Jean-Rémy Falleri; Raluca Uricaru; Thomas Degueule; Thomas Durieux (Proc. ACM Softw. Eng., 2025)